==3255772== Memcheck, a memory error detector ==3255772== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==3255772== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==3255772== Command: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/Test2dVertexBasedSimulationWithSrnModels -malloc_debug -malloc_dump -memory_info ==3255772== Parent PID: 3253918 ==3255772== ==3255772== ==3255772== FILE DESCRIPTORS: 9 open (3 std) at exit. ==3255772== Open file descriptor 12: ==3255772== at 0xF80207D: pipe (pipe.c:29) ==3255772== by 0x196AB07D: ??? ==3255772== by 0x14CBC4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==3255772== by 0x114A3418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==3255772== by 0x1143CD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==3255772== by 0x10133D38: PetscInitialize (pinit.c:924) ==3255772== by 0xF0FA2DF: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==3255772== by 0xF0FA32D: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==3255772== by 0x1221C2: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==3255772== by 0x11D90D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==3255772== by 0x11FCFC: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==3255772== by 0x11FB9C: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==3255772== by 0x120233: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==3255772== by 0x11BD35: main (Test2dVertexBasedSimulationWithSrnModels.cpp:19) ==3255772== ==3255772== Open file descriptor 8: /dev/shm/open_mpi.0000 ==3255772== at 0xF806A1C: __open_nocancel (open64_nocancel.c:39) ==3255772== by 0xF78ABCF: shm_open@@GLIBC_2.34 (shm_open.c:40) ==3255772== by 0xF135822: ??? ==3255772== by 0xF13596F: ??? ==3255772== by 0x14D616DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==3255772== by 0x14D61938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==3255772== by 0x14D17922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==3255772== by 0x14CBC2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==3255772== by 0x114A3418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==3255772== by 0x1143CD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==3255772== by 0x10133D38: PetscInitialize (pinit.c:924) ==3255772== by 0xF0FA2DF: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==3255772== by 0xF0FA32D: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==3255772== by 0x1221C2: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==3255772== by 0x11D90D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==3255772== by 0x11FCFC: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==3255772== by 0x11FB9C: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==3255772== by 0x120233: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==3255772== by 0x11BD35: main (Test2dVertexBasedSimulationWithSrnModels.cpp:19) ==3255772== ==3255772== Open file descriptor 115: ==3255772== ==3255772== ==3255772== Open file descriptor 112: ==3255772== ==3255772== ==3255772== Open file descriptor 4: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/Test2dVertexBasedSimulationWithSrnModels_valgrind.txt ==3255772== ==3255772== ==3255772== Open file descriptor 3: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==3255772== ==3255772== ==3255772== ==3255772== HEAP SUMMARY: ==3255772== in use at exit: 835,633 bytes in 11,677 blocks ==3255772== total heap usage: 1,133,243 allocs, 1,121,566 frees, 1,617,737,801 bytes allocated ==3255772== ==3255772== LEAK SUMMARY: ==3255772== definitely lost: 0 bytes in 0 blocks ==3255772== indirectly lost: 0 bytes in 0 blocks ==3255772== possibly lost: 0 bytes in 0 blocks ==3255772== still reachable: 56 bytes in 3 blocks ==3255772== suppressed: 835,577 bytes in 11,674 blocks ==3255772== Reachable blocks (those to which a pointer was found) are not shown. ==3255772== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==3255772== ==3255772== For lists of detected and suppressed errors, rerun with: -s ==3255772== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37)