==2439708== Memcheck, a memory error detector ==2439708== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==2439708== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==2439708== Command: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/Test2dVertexBasedSimulationWithSrnModels -malloc_debug -malloc_dump -memory_info ==2439708== Parent PID: 2437924 ==2439708== ==2439708== ==2439708== FILE DESCRIPTORS: 9 open (3 std) at exit. ==2439708== Open file descriptor 12: ==2439708== at 0xF4AD26D: pipe (pipe.c:29) ==2439708== by 0x1976E07D: ??? ==2439708== by 0x14D0D4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==2439708== by 0x1114A418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==2439708== by 0x110E3D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==2439708== by 0xFDDAD38: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.15.5) ==2439708== by 0xF0F52DF: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==2439708== by 0xF0F532D: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==2439708== by 0x12211E: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==2439708== by 0x11D8CD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==2439708== by 0x11FC58: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==2439708== by 0x11FAF8: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==2439708== by 0x12018F: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==2439708== by 0x11BCF5: main (Test2dVertexBasedSimulationWithSrnModels.cpp:19) ==2439708== ==2439708== Open file descriptor 8: /dev/shm/open_mpi.0000 ==2439708== at 0xF4B1C0C: __open_nocancel (open64_nocancel.c:39) ==2439708== by 0xF435BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) ==2439708== by 0xF12A822: ??? ==2439708== by 0xF12A96F: ??? ==2439708== by 0x14DB26DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==2439708== by 0x14DB2938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==2439708== by 0x14D68922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==2439708== by 0x14D0D2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==2439708== by 0x1114A418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==2439708== by 0x110E3D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==2439708== by 0xFDDAD38: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.15.5) ==2439708== by 0xF0F52DF: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==2439708== by 0xF0F532D: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==2439708== by 0x12211E: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==2439708== by 0x11D8CD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==2439708== by 0x11FC58: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==2439708== by 0x11FAF8: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==2439708== by 0x12018F: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==2439708== by 0x11BCF5: main (Test2dVertexBasedSimulationWithSrnModels.cpp:19) ==2439708== ==2439708== Open file descriptor 115: ==2439708== ==2439708== ==2439708== Open file descriptor 112: ==2439708== ==2439708== ==2439708== Open file descriptor 4: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/Test2dVertexBasedSimulationWithSrnModels_valgrind.txt ==2439708== ==2439708== ==2439708== Open file descriptor 3: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==2439708== ==2439708== ==2439708== ==2439708== HEAP SUMMARY: ==2439708== in use at exit: 858,024 bytes in 12,113 blocks ==2439708== total heap usage: 1,078,414 allocs, 1,066,301 frees, 1,618,006,330 bytes allocated ==2439708== ==2439708== LEAK SUMMARY: ==2439708== definitely lost: 0 bytes in 0 blocks ==2439708== indirectly lost: 0 bytes in 0 blocks ==2439708== possibly lost: 0 bytes in 0 blocks ==2439708== still reachable: 56 bytes in 3 blocks ==2439708== suppressed: 857,968 bytes in 12,110 blocks ==2439708== Reachable blocks (those to which a pointer was found) are not shown. ==2439708== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==2439708== ==2439708== For lists of detected and suppressed errors, rerun with: -s ==2439708== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 23 from 23)