==3292421== Memcheck, a memory error detector ==3292421== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==3292421== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==3292421== Command: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestOnLatticeSimulationWithCaBasedCellPopulation -malloc_debug -malloc_dump -memory_info ==3292421== Parent PID: 3289988 ==3292421== ==3292421== ==3292421== FILE DESCRIPTORS: 9 open (3 std) at exit. ==3292421== Open file descriptor 12: ==3292421== at 0xFDA907D: pipe (pipe.c:29) ==3292421== by 0x196AC07D: ??? ==3292421== by 0x14DE34CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==3292421== by 0x11A06418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==3292421== by 0x1199FD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==3292421== by 0x10696D38: PetscInitialize (pinit.c:924) ==3292421== by 0xF0FA2DF: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==3292421== by 0xF0FA32D: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==3292421== by 0x1D4486: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==3292421== by 0x1CDDB9: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==3292421== by 0x1D1554: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==3292421== by 0x1D13F4: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==3292421== by 0x1D1A8B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==3292421== by 0x1CC1D5: main (TestOnLatticeSimulationWithCaBasedCellPopulation.cpp:19) ==3292421== ==3292421== Open file descriptor 8: /dev/shm/open_mpi.0000 ==3292421== at 0xFDADA1C: __open_nocancel (open64_nocancel.c:39) ==3292421== by 0xFD31BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) ==3292421== by 0xF135822: ??? ==3292421== by 0xF13596F: ??? ==3292421== by 0x14E886DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==3292421== by 0x14E88938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==3292421== by 0x14E3E922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==3292421== by 0x14DE32DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==3292421== by 0x11A06418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==3292421== by 0x1199FD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==3292421== by 0x10696D38: PetscInitialize (pinit.c:924) ==3292421== by 0xF0FA2DF: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==3292421== by 0xF0FA32D: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==3292421== by 0x1D4486: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==3292421== by 0x1CDDB9: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==3292421== by 0x1D1554: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==3292421== by 0x1D13F4: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==3292421== by 0x1D1A8B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==3292421== by 0x1CC1D5: main (TestOnLatticeSimulationWithCaBasedCellPopulation.cpp:19) ==3292421== ==3292421== Open file descriptor 115: ==3292421== ==3292421== ==3292421== Open file descriptor 112: ==3292421== ==3292421== ==3292421== Open file descriptor 4: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestOnLatticeSimulationWithCaBasedCellPopulation_valgrind.txt ==3292421== ==3292421== ==3292421== Open file descriptor 3: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==3292421== ==3292421== ==3292421== ==3292421== HEAP SUMMARY: ==3292421== in use at exit: 835,564 bytes in 11,673 blocks ==3292421== total heap usage: 7,401,042 allocs, 7,389,369 frees, 8,325,657,734 bytes allocated ==3292421== ==3292421== LEAK SUMMARY: ==3292421== definitely lost: 0 bytes in 0 blocks ==3292421== indirectly lost: 0 bytes in 0 blocks ==3292421== possibly lost: 0 bytes in 0 blocks ==3292421== still reachable: 56 bytes in 3 blocks ==3292421== suppressed: 835,508 bytes in 11,670 blocks ==3292421== Reachable blocks (those to which a pointer was found) are not shown. ==3292421== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==3292421== ==3292421== For lists of detected and suppressed errors, rerun with: -s ==3292421== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 33 from 33)