==2471169== Memcheck, a memory error detector ==2471169== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==2471169== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==2471169== Command: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestRunningPottsBasedSimulationsTutorial -malloc_debug -malloc_dump -memory_info ==2471169== Parent PID: 2462270 ==2471169== ==2471169== ==2471169== FILE DESCRIPTORS: 9 open (3 std) at exit. ==2471169== Open file descriptor 12: ==2471169== at 0xD85326D: pipe (pipe.c:29) ==2471169== by 0x1976D07D: ??? ==2471169== by 0x14D0C4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==2471169== by 0x1114A418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==2471169== by 0x110E3D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==2471169== by 0xFDDAD38: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.15.5) ==2471169== by 0xD4992DF: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==2471169== by 0xD49932D: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==2471169== by 0x124670: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==2471169== by 0x11FBED: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==2471169== by 0x1221AA: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==2471169== by 0x12204A: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==2471169== by 0x1226E1: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==2471169== by 0x11E015: main (TestRunningPottsBasedSimulationsTutorial.cpp:19) ==2471169== ==2471169== Open file descriptor 8: /dev/shm/open_mpi.0000 ==2471169== at 0xD857C0C: __open_nocancel (open64_nocancel.c:39) ==2471169== by 0xD7DBBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) ==2471169== by 0xD4CE822: ??? ==2471169== by 0xD4CE96F: ??? ==2471169== by 0x14DB16DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==2471169== by 0x14DB1938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==2471169== by 0x14D67922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==2471169== by 0x14D0C2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==2471169== by 0x1114A418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==2471169== by 0x110E3D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==2471169== by 0xFDDAD38: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.15.5) ==2471169== by 0xD4992DF: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==2471169== by 0xD49932D: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==2471169== by 0x124670: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==2471169== by 0x11FBED: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==2471169== by 0x1221AA: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==2471169== by 0x12204A: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==2471169== by 0x1226E1: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==2471169== by 0x11E015: main (TestRunningPottsBasedSimulationsTutorial.cpp:19) ==2471169== ==2471169== Open file descriptor 115: ==2471169== ==2471169== ==2471169== Open file descriptor 112: ==2471169== ==2471169== ==2471169== Open file descriptor 4: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestRunningPottsBasedSimulationsTutorial_valgrind.txt ==2471169== ==2471169== ==2471169== Open file descriptor 3: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==2471169== ==2471169== ==2471169== ==2471169== HEAP SUMMARY: ==2471169== in use at exit: 857,961 bytes in 12,109 blocks ==2471169== total heap usage: 37,229,816 allocs, 37,217,707 frees, 3,890,123,709 bytes allocated ==2471169== ==2471169== LEAK SUMMARY: ==2471169== definitely lost: 0 bytes in 0 blocks ==2471169== indirectly lost: 0 bytes in 0 blocks ==2471169== possibly lost: 0 bytes in 0 blocks ==2471169== still reachable: 56 bytes in 3 blocks ==2471169== suppressed: 857,905 bytes in 12,106 blocks ==2471169== Reachable blocks (those to which a pointer was found) are not shown. ==2471169== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==2471169== ==2471169== For lists of detected and suppressed errors, rerun with: -s ==2471169== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 19 from 19)