==3365442== Memcheck, a memory error detector ==3365442== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==3365442== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==3365442== Command: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/crypt/test/TestCryptSimulation2dWithVertexBasedCellPopulation -malloc_debug -malloc_dump -memory_info ==3365442== Parent PID: 3349457 ==3365442== ==3365442== ==3365442== FILE DESCRIPTORS: 9 open (3 std) at exit. ==3365442== Open file descriptor 12: ==3365442== at 0x125BB07D: pipe (pipe.c:29) ==3365442== by 0x1B36D07D: ??? ==3365442== by 0x164F34CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==3365442== by 0x11EC3418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==3365442== by 0x11E5CD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==3365442== by 0x10B53D38: PetscInitialize (pinit.c:924) ==3365442== by 0x109BA2DF: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==3365442== by 0x109BA32D: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==3365442== by 0x224461: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==3365442== by 0x21BE79: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==3365442== by 0x21FA80: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==3365442== by 0x21F920: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==3365442== by 0x21FFB7: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==3365442== by 0x21A295: main (TestCryptSimulation2dWithVertexBasedCellPopulation.cpp:19) ==3365442== ==3365442== Open file descriptor 8: /dev/shm/open_mpi.0000 ==3365442== at 0x125BFA1C: __open_nocancel (open64_nocancel.c:39) ==3365442== by 0x12543BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) ==3365442== by 0x109F5822: ??? ==3365442== by 0x109F596F: ??? ==3365442== by 0x165986DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==3365442== by 0x16598938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==3365442== by 0x1654E922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==3365442== by 0x164F32DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==3365442== by 0x11EC3418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==3365442== by 0x11E5CD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==3365442== by 0x10B53D38: PetscInitialize (pinit.c:924) ==3365442== by 0x109BA2DF: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==3365442== by 0x109BA32D: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==3365442== by 0x224461: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==3365442== by 0x21BE79: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==3365442== by 0x21FA80: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==3365442== by 0x21F920: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==3365442== by 0x21FFB7: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==3365442== by 0x21A295: main (TestCryptSimulation2dWithVertexBasedCellPopulation.cpp:19) ==3365442== ==3365442== Open file descriptor 115: ==3365442== ==3365442== ==3365442== Open file descriptor 112: ==3365442== ==3365442== ==3365442== Open file descriptor 4: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestCryptSimulation2dWithVertexBasedCellPopulation_valgrind.txt ==3365442== ==3365442== ==3365442== Open file descriptor 3: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==3365442== ==3365442== ==3365442== ==3365442== HEAP SUMMARY: ==3365442== in use at exit: 835,580 bytes in 11,673 blocks ==3365442== total heap usage: 3,726,635 allocs, 3,714,962 frees, 1,823,334,117 bytes allocated ==3365442== ==3365442== LEAK SUMMARY: ==3365442== definitely lost: 0 bytes in 0 blocks ==3365442== indirectly lost: 0 bytes in 0 blocks ==3365442== possibly lost: 0 bytes in 0 blocks ==3365442== still reachable: 56 bytes in 3 blocks ==3365442== suppressed: 835,524 bytes in 11,670 blocks ==3365442== Reachable blocks (those to which a pointer was found) are not shown. ==3365442== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==3365442== ==3365442== For lists of detected and suppressed errors, rerun with: -s ==3365442== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 33 from 33)