==3387205== Memcheck, a memory error detector ==3387205== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==3387205== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==3387205== Command: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestAlarcon2004OxygenBasedCellCycleOdeSystem -malloc_debug -malloc_dump -memory_info ==3387205== Parent PID: 3385653 ==3387205== ==3387205== ==3387205== FILE DESCRIPTORS: 9 open (3 std) at exit. ==3387205== Open file descriptor 12: ==3387205== at 0xEF9E07D: pipe (pipe.c:29) ==3387205== by 0x196AC07D: ??? ==3387205== by 0x13C5B4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==3387205== by 0xEBEB418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==3387205== by 0xEB84D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==3387205== by 0xD87BD38: PetscInitialize (pinit.c:924) ==3387205== by 0xD6E22DF: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==3387205== by 0xD6E232D: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==3387205== by 0x123229: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==3387205== by 0x11E723: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==3387205== by 0x120D04: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==3387205== by 0x120C00: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==3387205== by 0x121213: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==3387205== by 0x11CF25: main (TestAlarcon2004OxygenBasedCellCycleOdeSystem.cpp:18) ==3387205== ==3387205== Open file descriptor 8: /dev/shm/open_mpi.0000 ==3387205== at 0xEFA2A1C: __open_nocancel (open64_nocancel.c:39) ==3387205== by 0xEF26BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) ==3387205== by 0xD71D822: ??? ==3387205== by 0xD71D96F: ??? ==3387205== by 0x13D006DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==3387205== by 0x13D00938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==3387205== by 0x13CB6922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==3387205== by 0x13C5B2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==3387205== by 0xEBEB418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==3387205== by 0xEB84D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==3387205== by 0xD87BD38: PetscInitialize (pinit.c:924) ==3387205== by 0xD6E22DF: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==3387205== by 0xD6E232D: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==3387205== by 0x123229: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==3387205== by 0x11E723: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==3387205== by 0x120D04: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==3387205== by 0x120C00: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==3387205== by 0x121213: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==3387205== by 0x11CF25: main (TestAlarcon2004OxygenBasedCellCycleOdeSystem.cpp:18) ==3387205== ==3387205== Open file descriptor 115: ==3387205== ==3387205== ==3387205== Open file descriptor 112: ==3387205== ==3387205== ==3387205== Open file descriptor 4: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestAlarcon2004OxygenBasedCellCycleOdeSystem_valgrind.txt ==3387205== ==3387205== ==3387205== Open file descriptor 3: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==3387205== ==3387205== ==3387205== ==3387205== HEAP SUMMARY: ==3387205== in use at exit: 835,601 bytes in 11,676 blocks ==3387205== total heap usage: 174,506 allocs, 162,830 frees, 1,551,385,013 bytes allocated ==3387205== ==3387205== LEAK SUMMARY: ==3387205== definitely lost: 0 bytes in 0 blocks ==3387205== indirectly lost: 0 bytes in 0 blocks ==3387205== possibly lost: 0 bytes in 0 blocks ==3387205== still reachable: 24 bytes in 2 blocks ==3387205== suppressed: 835,577 bytes in 11,674 blocks ==3387205== Reachable blocks (those to which a pointer was found) are not shown. ==3387205== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==3387205== ==3387205== For lists of detected and suppressed errors, rerun with: -s ==3387205== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37)