==3401629== Memcheck, a memory error detector ==3401629== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==3401629== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==3401629== Command: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/crypt/test/TestCryptSimulation2dWithMeshBasedCellPopulation -malloc_debug -malloc_dump -memory_info ==3401629== Parent PID: 3385653 ==3401629== ==3401629== ==3401629== FILE DESCRIPTORS: 9 open (3 std) at exit. ==3401629== Open file descriptor 12: ==3401629== at 0x111ED07D: pipe (pipe.c:29) ==3401629== by 0x1B36D07D: ??? ==3401629== by 0x165854CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==3401629== by 0x12E4A418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==3401629== by 0x12DE3D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==3401629== by 0x11ADAD38: PetscInitialize (pinit.c:924) ==3401629== by 0x109BA2DF: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==3401629== by 0x109BA32D: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==3401629== by 0x23B368: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==3401629== by 0x231839: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==3401629== by 0x235F6A: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==3401629== by 0x235E0A: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==3401629== by 0x2364A1: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==3401629== by 0x22FC55: main (TestCryptSimulation2dWithMeshBasedCellPopulation.cpp:19) ==3401629== ==3401629== Open file descriptor 8: /dev/shm/open_mpi.0000 ==3401629== at 0x111F1A1C: __open_nocancel (open64_nocancel.c:39) ==3401629== by 0x11175BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) ==3401629== by 0x109F5822: ??? ==3401629== by 0x109F596F: ??? ==3401629== by 0x1662A6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==3401629== by 0x1662A938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==3401629== by 0x165E0922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==3401629== by 0x165852DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==3401629== by 0x12E4A418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==3401629== by 0x12DE3D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==3401629== by 0x11ADAD38: PetscInitialize (pinit.c:924) ==3401629== by 0x109BA2DF: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==3401629== by 0x109BA32D: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==3401629== by 0x23B368: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==3401629== by 0x231839: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==3401629== by 0x235F6A: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==3401629== by 0x235E0A: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==3401629== by 0x2364A1: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==3401629== by 0x22FC55: main (TestCryptSimulation2dWithMeshBasedCellPopulation.cpp:19) ==3401629== ==3401629== Open file descriptor 115: ==3401629== ==3401629== ==3401629== Open file descriptor 112: ==3401629== ==3401629== ==3401629== Open file descriptor 4: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestCryptSimulation2dWithMeshBasedCellPopulation_valgrind.txt ==3401629== ==3401629== ==3401629== Open file descriptor 3: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==3401629== ==3401629== ==3401629== ==3401629== HEAP SUMMARY: ==3401629== in use at exit: 835,580 bytes in 11,673 blocks ==3401629== total heap usage: 6,319,812 allocs, 6,308,139 frees, 2,259,511,051 bytes allocated ==3401629== ==3401629== LEAK SUMMARY: ==3401629== definitely lost: 0 bytes in 0 blocks ==3401629== indirectly lost: 0 bytes in 0 blocks ==3401629== possibly lost: 0 bytes in 0 blocks ==3401629== still reachable: 56 bytes in 3 blocks ==3401629== suppressed: 835,524 bytes in 11,670 blocks ==3401629== Reachable blocks (those to which a pointer was found) are not shown. ==3401629== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==3401629== ==3401629== For lists of detected and suppressed errors, rerun with: -s ==3401629== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 33 from 33)