==3385903== Memcheck, a memory error detector ==3385903== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==3385903== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==3385903== Command: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/io/test/TestHdf5DataReader -malloc_debug -malloc_dump -memory_info ==3385903== Parent PID: 3385653 ==3385903== ==3385903== ==3385903== FILE DESCRIPTORS: 9 open (3 std) at exit. ==3385903== Open file descriptor 12: ==3385903== at 0x646507D: pipe (pipe.c:29) ==3385903== by 0xAF1807D: ??? ==3385903== by 0x8F474CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==3385903== by 0x6660418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==3385903== by 0x65F9D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==3385903== by 0x4A96D38: PetscInitialize (pinit.c:924) ==3385903== by 0x496D2DF: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==3385903== by 0x496D32D: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==3385903== by 0x11BB1C: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==3385903== by 0x117033: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==3385903== by 0x119B8A: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==3385903== by 0x119A2A: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==3385903== by 0x11A0C1: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==3385903== by 0x1151B5: main (TestHdf5DataReader.cpp:19) ==3385903== ==3385903== Open file descriptor 8: /dev/shm/open_mpi.0000 ==3385903== at 0x6469A1C: __open_nocancel (open64_nocancel.c:39) ==3385903== by 0x63EDBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) ==3385903== by 0x5D26822: ??? ==3385903== by 0x5D2696F: ??? ==3385903== by 0x8FEC6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==3385903== by 0x8FEC938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==3385903== by 0x8FA2922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==3385903== by 0x8F472DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==3385903== by 0x6660418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==3385903== by 0x65F9D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==3385903== by 0x4A96D38: PetscInitialize (pinit.c:924) ==3385903== by 0x496D2DF: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==3385903== by 0x496D32D: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==3385903== by 0x11BB1C: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==3385903== by 0x117033: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==3385903== by 0x119B8A: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==3385903== by 0x119A2A: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==3385903== by 0x11A0C1: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==3385903== by 0x1151B5: main (TestHdf5DataReader.cpp:19) ==3385903== ==3385903== Open file descriptor 115: ==3385903== ==3385903== ==3385903== Open file descriptor 112: ==3385903== ==3385903== ==3385903== Open file descriptor 4: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestHdf5DataReader_valgrind.txt ==3385903== ==3385903== ==3385903== Open file descriptor 3: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==3385903== ==3385903== ==3385903== ==3385903== HEAP SUMMARY: ==3385903== in use at exit: 835,633 bytes in 11,686 blocks ==3385903== total heap usage: 66,926 allocs, 55,240 frees, 1,550,517,519 bytes allocated ==3385903== ==3385903== LEAK SUMMARY: ==3385903== definitely lost: 0 bytes in 0 blocks ==3385903== indirectly lost: 0 bytes in 0 blocks ==3385903== possibly lost: 0 bytes in 0 blocks ==3385903== still reachable: 24 bytes in 2 blocks ==3385903== suppressed: 835,609 bytes in 11,684 blocks ==3385903== Reachable blocks (those to which a pointer was found) are not shown. ==3385903== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==3385903== ==3385903== For lists of detected and suppressed errors, rerun with: -s ==3385903== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 42 from 36)