==2539448== Memcheck, a memory error detector ==2539448== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==2539448== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==2539448== Command: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestOnLatticeSimulationWithPdes -malloc_debug -malloc_dump -memory_info ==2539448== Parent PID: 2537244 ==2539448== ==2539448== ==2539448== FILE DESCRIPTORS: 9 open (3 std) at exit. ==2539448== Open file descriptor 12: ==2539448== at 0xF93026D: pipe (pipe.c:29) ==2539448== by 0x1976D07D: ??? ==2539448== by 0x14D174CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==2539448== by 0x11233418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==2539448== by 0x111CCD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==2539448== by 0xFEC1D38: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.15.5) ==2539448== by 0xF4912DF: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==2539448== by 0xF49132D: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==2539448== by 0x13578E: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==2539448== by 0x130383: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==2539448== by 0x132FA4: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==2539448== by 0x132E44: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==2539448== by 0x1334DB: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==2539448== by 0x12E775: main (TestOnLatticeSimulationWithPdes.cpp:19) ==2539448== ==2539448== Open file descriptor 8: /dev/shm/open_mpi.0000 ==2539448== at 0xF934C0C: __open_nocancel (open64_nocancel.c:39) ==2539448== by 0xF8B8BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) ==2539448== by 0xF4C6822: ??? ==2539448== by 0xF4C696F: ??? ==2539448== by 0x14DBC6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==2539448== by 0x14DBC938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==2539448== by 0x14D72922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==2539448== by 0x14D172DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==2539448== by 0x11233418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==2539448== by 0x111CCD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==2539448== by 0xFEC1D38: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.15.5) ==2539448== by 0xF4912DF: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==2539448== by 0xF49132D: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==2539448== by 0x13578E: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==2539448== by 0x130383: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==2539448== by 0x132FA4: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==2539448== by 0x132E44: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==2539448== by 0x1334DB: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==2539448== by 0x12E775: main (TestOnLatticeSimulationWithPdes.cpp:19) ==2539448== ==2539448== Open file descriptor 115: ==2539448== ==2539448== ==2539448== Open file descriptor 112: ==2539448== ==2539448== ==2539448== Open file descriptor 4: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestOnLatticeSimulationWithPdes_valgrind.txt ==2539448== ==2539448== ==2539448== Open file descriptor 3: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==2539448== ==2539448== ==2539448== ==2539448== HEAP SUMMARY: ==2539448== in use at exit: 857,961 bytes in 12,109 blocks ==2539448== total heap usage: 1,907,046 allocs, 1,894,937 frees, 1,961,031,769 bytes allocated ==2539448== ==2539448== LEAK SUMMARY: ==2539448== definitely lost: 0 bytes in 0 blocks ==2539448== indirectly lost: 0 bytes in 0 blocks ==2539448== possibly lost: 0 bytes in 0 blocks ==2539448== still reachable: 56 bytes in 3 blocks ==2539448== suppressed: 857,905 bytes in 12,106 blocks ==2539448== Reachable blocks (those to which a pointer was found) are not shown. ==2539448== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==2539448== ==2539448== For lists of detected and suppressed errors, rerun with: -s ==2539448== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 19 from 19)