==3506493== Memcheck, a memory error detector ==3506493== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==3506493== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==3506493== Command: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestNodeBasedCellPopulation -malloc_debug -malloc_dump -memory_info ==3506493== Parent PID: 3504736 ==3506493== ==3506493== ==3506493== FILE DESCRIPTORS: 9 open (3 std) at exit. ==3506493== Open file descriptor 12: ==3506493== at 0xF8DB07D: pipe (pipe.c:29) ==3506493== by 0x196B107D: ??? ==3506493== by 0x14CC24CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==3506493== by 0x114A9418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==3506493== by 0x11442D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==3506493== by 0x10137D38: PetscInitialize (pinit.c:924) ==3506493== by 0xF18F2DF: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==3506493== by 0xF18F32D: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==3506493== by 0x2E2582: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==3506493== by 0x2D9079: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==3506493== by 0x2DD8D6: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==3506493== by 0x2DD776: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==3506493== by 0x2DDE0D: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==3506493== by 0x2D7495: main (TestNodeBasedCellPopulation.cpp:19) ==3506493== ==3506493== Open file descriptor 8: /dev/shm/open_mpi.0000 ==3506493== at 0xF8DFA1C: __open_nocancel (open64_nocancel.c:39) ==3506493== by 0xF863BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) ==3506493== by 0xF1CA822: ??? ==3506493== by 0xF1CA96F: ??? ==3506493== by 0x14D676DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==3506493== by 0x14D67938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==3506493== by 0x14D1D922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==3506493== by 0x14CC22DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==3506493== by 0x114A9418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==3506493== by 0x11442D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==3506493== by 0x10137D38: PetscInitialize (pinit.c:924) ==3506493== by 0xF18F2DF: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==3506493== by 0xF18F32D: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==3506493== by 0x2E2582: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==3506493== by 0x2D9079: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==3506493== by 0x2DD8D6: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==3506493== by 0x2DD776: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==3506493== by 0x2DDE0D: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==3506493== by 0x2D7495: main (TestNodeBasedCellPopulation.cpp:19) ==3506493== ==3506493== Open file descriptor 115: ==3506493== ==3506493== ==3506493== Open file descriptor 112: ==3506493== ==3506493== ==3506493== Open file descriptor 4: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestNodeBasedCellPopulation_valgrind.txt ==3506493== ==3506493== ==3506493== Open file descriptor 3: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==3506493== ==3506493== ==3506493== ==3506493== HEAP SUMMARY: ==3506493== in use at exit: 835,564 bytes in 11,673 blocks ==3506493== total heap usage: 20,201,035 allocs, 20,189,362 frees, 2,764,730,394 bytes allocated ==3506493== ==3506493== LEAK SUMMARY: ==3506493== definitely lost: 0 bytes in 0 blocks ==3506493== indirectly lost: 0 bytes in 0 blocks ==3506493== possibly lost: 0 bytes in 0 blocks ==3506493== still reachable: 56 bytes in 3 blocks ==3506493== suppressed: 835,508 bytes in 11,670 blocks ==3506493== Reachable blocks (those to which a pointer was found) are not shown. ==3506493== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==3506493== ==3506493== For lists of detected and suppressed errors, rerun with: -s ==3506493== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 33 from 33)