==3520593== Memcheck, a memory error detector ==3520593== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==3520593== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==3520593== Command: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/crypt/test/TestOffLatticeCryptProjectionSimulation -malloc_debug -malloc_dump -memory_info ==3520593== Parent PID: 3504736 ==3520593== ==3520593== ==3520593== FILE DESCRIPTORS: 9 open (3 std) at exit. ==3520593== Open file descriptor 12: ==3520593== at 0x1266607D: pipe (pipe.c:29) ==3520593== by 0x1B37207D: ??? ==3520593== by 0x164F34CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==3520593== by 0x11E87418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==3520593== by 0x11E20D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==3520593== by 0x10AE9D38: PetscInitialize (pinit.c:924) ==3520593== by 0x109C02DF: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==3520593== by 0x109C032D: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==3520593== by 0x135AC5: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==3520593== by 0x12F30D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==3520593== by 0x131D16: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==3520593== by 0x131BB6: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==3520593== by 0x13224D: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==3520593== by 0x12D735: main (TestOffLatticeCryptProjectionSimulation.cpp:19) ==3520593== ==3520593== Open file descriptor 8: /dev/shm/open_mpi.0000 ==3520593== at 0x1266AA1C: __open_nocancel (open64_nocancel.c:39) ==3520593== by 0x125EEBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) ==3520593== by 0x11D79822: ??? ==3520593== by 0x11D7996F: ??? ==3520593== by 0x165986DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==3520593== by 0x16598938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==3520593== by 0x1654E922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==3520593== by 0x164F32DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==3520593== by 0x11E87418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==3520593== by 0x11E20D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==3520593== by 0x10AE9D38: PetscInitialize (pinit.c:924) ==3520593== by 0x109C02DF: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==3520593== by 0x109C032D: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==3520593== by 0x135AC5: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==3520593== by 0x12F30D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==3520593== by 0x131D16: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==3520593== by 0x131BB6: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==3520593== by 0x13224D: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==3520593== by 0x12D735: main (TestOffLatticeCryptProjectionSimulation.cpp:19) ==3520593== ==3520593== Open file descriptor 115: ==3520593== ==3520593== ==3520593== Open file descriptor 112: ==3520593== ==3520593== ==3520593== Open file descriptor 4: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestOffLatticeCryptProjectionSimulation_valgrind.txt ==3520593== ==3520593== ==3520593== Open file descriptor 3: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==3520593== ==3520593== ==3520593== ==3520593== HEAP SUMMARY: ==3520593== in use at exit: 835,649 bytes in 11,677 blocks ==3520593== total heap usage: 1,357,412 allocs, 1,345,735 frees, 1,655,057,834 bytes allocated ==3520593== ==3520593== LEAK SUMMARY: ==3520593== definitely lost: 0 bytes in 0 blocks ==3520593== indirectly lost: 0 bytes in 0 blocks ==3520593== possibly lost: 0 bytes in 0 blocks ==3520593== still reachable: 56 bytes in 3 blocks ==3520593== suppressed: 835,593 bytes in 11,674 blocks ==3520593== Reachable blocks (those to which a pointer was found) are not shown. ==3520593== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==3520593== ==3520593== For lists of detected and suppressed errors, rerun with: -s ==3520593== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 38 from 38)