==3507051== Memcheck, a memory error detector ==3507051== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==3507051== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==3507051== Command: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestOffLatticeSimulationWithPdes -malloc_debug -malloc_dump -memory_info ==3507051== Parent PID: 3504736 ==3507051== ==3507051== ==3507051== FILE DESCRIPTORS: 9 open (3 std) at exit. ==3507051== Open file descriptor 12: ==3507051== at 0xFCD007D: pipe (pipe.c:29) ==3507051== by 0x196B107D: ??? ==3507051== by 0x14CC94CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==3507051== by 0x11590418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==3507051== by 0x11529D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==3507051== by 0x10220D38: PetscInitialize (pinit.c:924) ==3507051== by 0xF49D2DF: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==3507051== by 0xF49D32D: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==3507051== by 0x226536: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==3507051== by 0x21FB71: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==3507051== by 0x2236DC: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==3507051== by 0x22357C: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==3507051== by 0x223C13: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==3507051== by 0x21DF55: main (TestOffLatticeSimulationWithPdes.cpp:19) ==3507051== ==3507051== Open file descriptor 8: /dev/shm/open_mpi.0000 ==3507051== at 0xFCD4A1C: __open_nocancel (open64_nocancel.c:39) ==3507051== by 0xFC58BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) ==3507051== by 0xF4D8822: ??? ==3507051== by 0xF4D896F: ??? ==3507051== by 0x14D6E6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==3507051== by 0x14D6E938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==3507051== by 0x14D24922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==3507051== by 0x14CC92DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==3507051== by 0x11590418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==3507051== by 0x11529D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==3507051== by 0x10220D38: PetscInitialize (pinit.c:924) ==3507051== by 0xF49D2DF: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==3507051== by 0xF49D32D: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==3507051== by 0x226536: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==3507051== by 0x21FB71: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==3507051== by 0x2236DC: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==3507051== by 0x22357C: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==3507051== by 0x223C13: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==3507051== by 0x21DF55: main (TestOffLatticeSimulationWithPdes.cpp:19) ==3507051== ==3507051== Open file descriptor 115: ==3507051== ==3507051== ==3507051== Open file descriptor 112: ==3507051== ==3507051== ==3507051== Open file descriptor 4: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestOffLatticeSimulationWithPdes_valgrind.txt ==3507051== ==3507051== ==3507051== Open file descriptor 3: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==3507051== ==3507051== ==3507051== ==3507051== HEAP SUMMARY: ==3507051== in use at exit: 835,564 bytes in 11,673 blocks ==3507051== total heap usage: 8,510,488 allocs, 8,498,815 frees, 2,861,664,328 bytes allocated ==3507051== ==3507051== LEAK SUMMARY: ==3507051== definitely lost: 0 bytes in 0 blocks ==3507051== indirectly lost: 0 bytes in 0 blocks ==3507051== possibly lost: 0 bytes in 0 blocks ==3507051== still reachable: 56 bytes in 3 blocks ==3507051== suppressed: 835,508 bytes in 11,670 blocks ==3507051== Reachable blocks (those to which a pointer was found) are not shown. ==3507051== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==3507051== ==3507051== For lists of detected and suppressed errors, rerun with: -s ==3507051== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 33 from 33)