==3507141== Memcheck, a memory error detector ==3507141== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==3507141== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==3507141== Command: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestOnLatticeSimulationWithCaBasedCellPopulation -malloc_debug -malloc_dump -memory_info ==3507141== Parent PID: 3504736 ==3507141== ==3507141== ==3507141== FILE DESCRIPTORS: 9 open (3 std) at exit. ==3507141== Open file descriptor 12: ==3507141== at 0xFDAF07D: pipe (pipe.c:29) ==3507141== by 0x196B207D: ??? ==3507141== by 0x14DE74CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==3507141== by 0x11A0C418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==3507141== by 0x119A5D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==3507141== by 0x1069CD38: PetscInitialize (pinit.c:924) ==3507141== by 0xF1002DF: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==3507141== by 0xF10032D: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==3507141== by 0x1D4486: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==3507141== by 0x1CDDB9: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==3507141== by 0x1D1554: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==3507141== by 0x1D13F4: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==3507141== by 0x1D1A8B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==3507141== by 0x1CC1D5: main (TestOnLatticeSimulationWithCaBasedCellPopulation.cpp:19) ==3507141== ==3507141== Open file descriptor 8: /dev/shm/open_mpi.0000 ==3507141== at 0xFDB3A1C: __open_nocancel (open64_nocancel.c:39) ==3507141== by 0xFD37BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) ==3507141== by 0xF13B822: ??? ==3507141== by 0xF13B96F: ??? ==3507141== by 0x14E8C6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==3507141== by 0x14E8C938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==3507141== by 0x14E42922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==3507141== by 0x14DE72DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==3507141== by 0x11A0C418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==3507141== by 0x119A5D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==3507141== by 0x1069CD38: PetscInitialize (pinit.c:924) ==3507141== by 0xF1002DF: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==3507141== by 0xF10032D: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==3507141== by 0x1D4486: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==3507141== by 0x1CDDB9: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==3507141== by 0x1D1554: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==3507141== by 0x1D13F4: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==3507141== by 0x1D1A8B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==3507141== by 0x1CC1D5: main (TestOnLatticeSimulationWithCaBasedCellPopulation.cpp:19) ==3507141== ==3507141== Open file descriptor 115: ==3507141== ==3507141== ==3507141== Open file descriptor 112: ==3507141== ==3507141== ==3507141== Open file descriptor 4: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestOnLatticeSimulationWithCaBasedCellPopulation_valgrind.txt ==3507141== ==3507141== ==3507141== Open file descriptor 3: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==3507141== ==3507141== ==3507141== ==3507141== HEAP SUMMARY: ==3507141== in use at exit: 835,564 bytes in 11,673 blocks ==3507141== total heap usage: 7,104,811 allocs, 7,093,138 frees, 8,283,947,215 bytes allocated ==3507141== ==3507141== LEAK SUMMARY: ==3507141== definitely lost: 0 bytes in 0 blocks ==3507141== indirectly lost: 0 bytes in 0 blocks ==3507141== possibly lost: 0 bytes in 0 blocks ==3507141== still reachable: 56 bytes in 3 blocks ==3507141== suppressed: 835,508 bytes in 11,670 blocks ==3507141== Reachable blocks (those to which a pointer was found) are not shown. ==3507141== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==3507141== ==3507141== For lists of detected and suppressed errors, rerun with: -s ==3507141== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 33 from 33)