==2589339== Memcheck, a memory error detector ==2589339== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==2589339== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==2589339== Command: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/crypt/test/TestCryptSimulation2dWithVertexBasedCellPopulation -malloc_debug -malloc_dump -memory_info ==2589339== Parent PID: 2580139 ==2589339== ==2589339== ==2589339== FILE DESCRIPTORS: 9 open (3 std) at exit. ==2589339== Open file descriptor 12: ==2589339== at 0x1226C26D: pipe (pipe.c:29) ==2589339== by 0x1B43507D: ??? ==2589339== by 0x1657E4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==2589339== by 0x11EB9418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==2589339== by 0x11E52D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==2589339== by 0x10B49D38: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.15.5) ==2589339== by 0x109BB2DF: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==2589339== by 0x109BB32D: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==2589339== by 0x2243BD: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==2589339== by 0x21BE39: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==2589339== by 0x21F9DC: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==2589339== by 0x21F87C: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==2589339== by 0x21FF13: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==2589339== by 0x21A255: main (TestCryptSimulation2dWithVertexBasedCellPopulation.cpp:19) ==2589339== ==2589339== Open file descriptor 8: /dev/shm/open_mpi.0000 ==2589339== at 0x12270C0C: __open_nocancel (open64_nocancel.c:39) ==2589339== by 0x121F4BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) ==2589339== by 0x109F0822: ??? ==2589339== by 0x109F096F: ??? ==2589339== by 0x166256DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==2589339== by 0x16625938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==2589339== by 0x165DB922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==2589339== by 0x1657E2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==2589339== by 0x11EB9418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==2589339== by 0x11E52D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==2589339== by 0x10B49D38: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.15.5) ==2589339== by 0x109BB2DF: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==2589339== by 0x109BB32D: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==2589339== by 0x2243BD: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==2589339== by 0x21BE39: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==2589339== by 0x21F9DC: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==2589339== by 0x21F87C: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==2589339== by 0x21FF13: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==2589339== by 0x21A255: main (TestCryptSimulation2dWithVertexBasedCellPopulation.cpp:19) ==2589339== ==2589339== Open file descriptor 115: ==2589339== ==2589339== ==2589339== Open file descriptor 112: ==2589339== ==2589339== ==2589339== Open file descriptor 4: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestCryptSimulation2dWithVertexBasedCellPopulation_valgrind.txt ==2589339== ==2589339== ==2589339== Open file descriptor 3: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==2589339== ==2589339== ==2589339== ==2589339== HEAP SUMMARY: ==2589339== in use at exit: 857,977 bytes in 12,109 blocks ==2589339== total heap usage: 3,317,480 allocs, 3,305,371 frees, 1,806,744,009 bytes allocated ==2589339== ==2589339== LEAK SUMMARY: ==2589339== definitely lost: 0 bytes in 0 blocks ==2589339== indirectly lost: 0 bytes in 0 blocks ==2589339== possibly lost: 0 bytes in 0 blocks ==2589339== still reachable: 56 bytes in 3 blocks ==2589339== suppressed: 857,921 bytes in 12,106 blocks ==2589339== Reachable blocks (those to which a pointer was found) are not shown. ==2589339== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==2589339== ==2589339== For lists of detected and suppressed errors, rerun with: -s ==2589339== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 19 from 19)