==2591222== Memcheck, a memory error detector ==2591222== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==2591222== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==2591222== Command: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/heart/test/TestMonodomainProblem -malloc_debug -malloc_dump -memory_info ==2591222== Parent PID: 2580139 ==2591222== ==2591222== Warning: invalid file descriptor -1 in syscall close() ==2591222== ==2591222== FILE DESCRIPTORS: 9 open (3 std) at exit. ==2591222== Open file descriptor 12: ==2591222== at 0xBDC126D: pipe (pipe.c:29) ==2591222== by 0x143F207D: ??? ==2591222== by 0x1009C4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==2591222== by 0xB9F6418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==2591222== by 0xB98FD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==2591222== by 0xA2D1D38: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.15.5) ==2591222== by 0xA1412DF: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==2591222== by 0xA14132D: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==2591222== by 0x14A212: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==2591222== by 0x1417ED: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==2591222== by 0x14497C: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==2591222== by 0x14481C: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==2591222== by 0x144EB3: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==2591222== by 0x13FBC5: main (TestMonodomainProblem.cpp:19) ==2591222== ==2591222== Open file descriptor 8: /dev/shm/open_mpi.0000 ==2591222== at 0xBDC5C0C: __open_nocancel (open64_nocancel.c:39) ==2591222== by 0xBD49BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) ==2591222== by 0xA176822: ??? ==2591222== by 0xA17696F: ??? ==2591222== by 0x101436DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==2591222== by 0x10143938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==2591222== by 0x100F9922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==2591222== by 0x1009C2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==2591222== by 0xB9F6418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==2591222== by 0xB98FD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==2591222== by 0xA2D1D38: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.15.5) ==2591222== by 0xA1412DF: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==2591222== by 0xA14132D: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==2591222== by 0x14A212: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==2591222== by 0x1417ED: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==2591222== by 0x14497C: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==2591222== by 0x14481C: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==2591222== by 0x144EB3: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==2591222== by 0x13FBC5: main (TestMonodomainProblem.cpp:19) ==2591222== ==2591222== Open file descriptor 115: ==2591222== ==2591222== ==2591222== Open file descriptor 112: ==2591222== ==2591222== ==2591222== Open file descriptor 4: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestMonodomainProblem_valgrind.txt ==2591222== ==2591222== ==2591222== Open file descriptor 3: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==2591222== ==2591222== ==2591222== ==2591222== HEAP SUMMARY: ==2591222== in use at exit: 858,425 bytes in 12,118 blocks ==2591222== total heap usage: 6,271,493 allocs, 6,259,375 frees, 4,206,283,138 bytes allocated ==2591222== ==2591222== LEAK SUMMARY: ==2591222== definitely lost: 0 bytes in 0 blocks ==2591222== indirectly lost: 0 bytes in 0 blocks ==2591222== possibly lost: 0 bytes in 0 blocks ==2591222== still reachable: 24 bytes in 2 blocks ==2591222== suppressed: 858,401 bytes in 12,116 blocks ==2591222== Reachable blocks (those to which a pointer was found) are not shown. ==2591222== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==2591222== ==2591222== For lists of detected and suppressed errors, rerun with: -s ==2591222== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 114 from 20)