==2589427== Memcheck, a memory error detector ==2589427== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==2589427== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==2589427== Command: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/crypt/test/TestRunningCryptSimulationsWithMutationsTutorial -malloc_debug -malloc_dump -memory_info ==2589427== Parent PID: 2580139 ==2589427== ==2589427== ==2589427== FILE DESCRIPTORS: 9 open (3 std) at exit. ==2589427== Open file descriptor 12: ==2589427== at 0x1222A26D: pipe (pipe.c:29) ==2589427== by 0x1B43507D: ??? ==2589427== by 0x1657E4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==2589427== by 0x11E77418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==2589427== by 0x11E10D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==2589427== by 0x10AE4D38: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.15.5) ==2589427== by 0x109BB2DF: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==2589427== by 0x109BB32D: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==2589427== by 0x123DF1: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==2589427== by 0x11F6D3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==2589427== by 0x1218D8: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==2589427== by 0x1217D4: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==2589427== by 0x121DE7: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==2589427== by 0x11DED5: main (TestRunningCryptSimulationsWithMutationsTutorial.cpp:18) ==2589427== ==2589427== Open file descriptor 8: /dev/shm/open_mpi.0000 ==2589427== at 0x1222EC0C: __open_nocancel (open64_nocancel.c:39) ==2589427== by 0x121B2BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) ==2589427== by 0x11D6E822: ??? ==2589427== by 0x11D6E96F: ??? ==2589427== by 0x166256DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==2589427== by 0x16625938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==2589427== by 0x165DB922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==2589427== by 0x1657E2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==2589427== by 0x11E77418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==2589427== by 0x11E10D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==2589427== by 0x10AE4D38: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.15.5) ==2589427== by 0x109BB2DF: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==2589427== by 0x109BB32D: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==2589427== by 0x123DF1: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==2589427== by 0x11F6D3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==2589427== by 0x1218D8: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==2589427== by 0x1217D4: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==2589427== by 0x121DE7: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==2589427== by 0x11DED5: main (TestRunningCryptSimulationsWithMutationsTutorial.cpp:18) ==2589427== ==2589427== Open file descriptor 115: ==2589427== ==2589427== ==2589427== Open file descriptor 112: ==2589427== ==2589427== ==2589427== Open file descriptor 4: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestRunningCryptSimulationsWithMutationsTutorial_valgrind.txt ==2589427== ==2589427== ==2589427== Open file descriptor 3: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==2589427== ==2589427== ==2589427== ==2589427== HEAP SUMMARY: ==2589427== in use at exit: 857,977 bytes in 12,109 blocks ==2589427== total heap usage: 16,199,677 allocs, 16,187,568 frees, 3,034,480,938 bytes allocated ==2589427== ==2589427== LEAK SUMMARY: ==2589427== definitely lost: 0 bytes in 0 blocks ==2589427== indirectly lost: 0 bytes in 0 blocks ==2589427== possibly lost: 0 bytes in 0 blocks ==2589427== still reachable: 56 bytes in 3 blocks ==2589427== suppressed: 857,921 bytes in 12,106 blocks ==2589427== Reachable blocks (those to which a pointer was found) are not shown. ==2589427== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==2589427== ==2589427== For lists of detected and suppressed errors, rerun with: -s ==2589427== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 19 from 19)