==2589079== Memcheck, a memory error detector ==2589079== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==2589079== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==2589079== Command: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestRunningPottsBasedSimulationsTutorial -malloc_debug -malloc_dump -memory_info ==2589079== Parent PID: 2580139 ==2589079== ==2589079== ==2589079== FILE DESCRIPTORS: 9 open (3 std) at exit. ==2589079== Open file descriptor 12: ==2589079== at 0xD85326D: pipe (pipe.c:29) ==2589079== by 0x1977507D: ??? ==2589079== by 0x14D124CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==2589079== by 0x11151418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==2589079== by 0x110EAD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==2589079== by 0xFDE1D38: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.15.5) ==2589079== by 0xD4992DF: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==2589079== by 0xD49932D: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==2589079== by 0x124670: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==2589079== by 0x11FBED: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==2589079== by 0x1221AA: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==2589079== by 0x12204A: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==2589079== by 0x1226E1: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==2589079== by 0x11E015: main (TestRunningPottsBasedSimulationsTutorial.cpp:19) ==2589079== ==2589079== Open file descriptor 8: /dev/shm/open_mpi.0000 ==2589079== at 0xD857C0C: __open_nocancel (open64_nocancel.c:39) ==2589079== by 0xD7DBBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) ==2589079== by 0xD4CE822: ??? ==2589079== by 0xD4CE96F: ??? ==2589079== by 0x14DB76DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==2589079== by 0x14DB7938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==2589079== by 0x14D6D922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==2589079== by 0x14D122DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==2589079== by 0x11151418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==2589079== by 0x110EAD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==2589079== by 0xFDE1D38: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.15.5) ==2589079== by 0xD4992DF: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==2589079== by 0xD49932D: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==2589079== by 0x124670: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==2589079== by 0x11FBED: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==2589079== by 0x1221AA: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==2589079== by 0x12204A: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==2589079== by 0x1226E1: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==2589079== by 0x11E015: main (TestRunningPottsBasedSimulationsTutorial.cpp:19) ==2589079== ==2589079== Open file descriptor 115: ==2589079== ==2589079== ==2589079== Open file descriptor 112: ==2589079== ==2589079== ==2589079== Open file descriptor 4: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestRunningPottsBasedSimulationsTutorial_valgrind.txt ==2589079== ==2589079== ==2589079== Open file descriptor 3: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==2589079== ==2589079== ==2589079== ==2589079== HEAP SUMMARY: ==2589079== in use at exit: 857,961 bytes in 12,109 blocks ==2589079== total heap usage: 37,227,708 allocs, 37,215,599 frees, 3,889,701,563 bytes allocated ==2589079== ==2589079== LEAK SUMMARY: ==2589079== definitely lost: 0 bytes in 0 blocks ==2589079== indirectly lost: 0 bytes in 0 blocks ==2589079== possibly lost: 0 bytes in 0 blocks ==2589079== still reachable: 56 bytes in 3 blocks ==2589079== suppressed: 857,905 bytes in 12,106 blocks ==2589079== Reachable blocks (those to which a pointer was found) are not shown. ==2589079== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==2589079== ==2589079== For lists of detected and suppressed errors, rerun with: -s ==2589079== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 19 from 19)