==2581708== Memcheck, a memory error detector ==2581708== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==2581708== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==2581708== Command: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestTysonNovak2001OdeSystem -malloc_debug -malloc_dump -memory_info ==2581708== Parent PID: 2580139 ==2581708== ==2581708== ==2581708== FILE DESCRIPTORS: 9 open (3 std) at exit. ==2581708== Open file descriptor 12: ==2581708== at 0xDB4B26D: pipe (pipe.c:29) ==2581708== by 0x1977507D: ??? ==2581708== by 0x14D124CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==2581708== by 0x11151418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==2581708== by 0x110EAD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==2581708== by 0xFDE1D38: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.15.5) ==2581708== by 0xD7512DF: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==2581708== by 0xD75132D: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==2581708== by 0x12417A: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==2581708== by 0x11F743: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==2581708== by 0x121D24: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==2581708== by 0x121C20: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==2581708== by 0x122233: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==2581708== by 0x11DF45: main (TestTysonNovak2001OdeSystem.cpp:18) ==2581708== ==2581708== Open file descriptor 8: /dev/shm/open_mpi.0000 ==2581708== at 0xDB4FC0C: __open_nocancel (open64_nocancel.c:39) ==2581708== by 0xDAD3BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) ==2581708== by 0xD786822: ??? ==2581708== by 0xD78696F: ??? ==2581708== by 0x14DB76DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==2581708== by 0x14DB7938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==2581708== by 0x14D6D922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==2581708== by 0x14D122DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==2581708== by 0x11151418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==2581708== by 0x110EAD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==2581708== by 0xFDE1D38: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.15.5) ==2581708== by 0xD7512DF: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==2581708== by 0xD75132D: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==2581708== by 0x12417A: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==2581708== by 0x11F743: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==2581708== by 0x121D24: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==2581708== by 0x121C20: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==2581708== by 0x122233: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==2581708== by 0x11DF45: main (TestTysonNovak2001OdeSystem.cpp:18) ==2581708== ==2581708== Open file descriptor 115: ==2581708== ==2581708== ==2581708== Open file descriptor 112: ==2581708== ==2581708== ==2581708== Open file descriptor 4: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestTysonNovak2001OdeSystem_valgrind.txt ==2581708== ==2581708== ==2581708== Open file descriptor 3: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==2581708== ==2581708== ==2581708== ==2581708== HEAP SUMMARY: ==2581708== in use at exit: 857,992 bytes in 12,112 blocks ==2581708== total heap usage: 67,060 allocs, 54,948 frees, 1,543,779,869 bytes allocated ==2581708== ==2581708== LEAK SUMMARY: ==2581708== definitely lost: 0 bytes in 0 blocks ==2581708== indirectly lost: 0 bytes in 0 blocks ==2581708== possibly lost: 0 bytes in 0 blocks ==2581708== still reachable: 24 bytes in 2 blocks ==2581708== suppressed: 857,968 bytes in 12,110 blocks ==2581708== Reachable blocks (those to which a pointer was found) are not shown. ==2581708== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==2581708== ==2581708== For lists of detected and suppressed errors, rerun with: -s ==2581708== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 23 from 23)