==3581305== Memcheck, a memory error detector ==3581305== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==3581305== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==3581305== Command: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/heart/test/TestMonodomainProblem -malloc_debug -malloc_dump -memory_info ==3581305== Parent PID: 3562972 ==3581305== ==3581305== Warning: invalid file descriptor -1 in syscall close() ==3581305== ==3581305== FILE DESCRIPTORS: 9 open (3 std) at exit. ==3581305== Open file descriptor 12: ==3581305== at 0xC11607D: pipe (pipe.c:29) ==3581305== by 0x1432F07D: ??? ==3581305== by 0xFFFF4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==3581305== by 0xBA04418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==3581305== by 0xB99DD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==3581305== by 0xA2DFD38: PetscInitialize (pinit.c:924) ==3581305== by 0xA1442DF: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==3581305== by 0xA14432D: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==3581305== by 0x14A2B6: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==3581305== by 0x14182D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==3581305== by 0x144A20: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==3581305== by 0x1448C0: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==3581305== by 0x144F57: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==3581305== by 0x13FC05: main (TestMonodomainProblem.cpp:19) ==3581305== ==3581305== Open file descriptor 8: /dev/shm/open_mpi.0000 ==3581305== at 0xC11AA1C: __open_nocancel (open64_nocancel.c:39) ==3581305== by 0xC09EBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) ==3581305== by 0xA17F822: ??? ==3581305== by 0xA17F96F: ??? ==3581305== by 0x100A66DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==3581305== by 0x100A6938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==3581305== by 0x1005C922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==3581305== by 0xFFFF2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==3581305== by 0xBA04418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==3581305== by 0xB99DD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==3581305== by 0xA2DFD38: PetscInitialize (pinit.c:924) ==3581305== by 0xA1442DF: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==3581305== by 0xA14432D: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==3581305== by 0x14A2B6: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==3581305== by 0x14182D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==3581305== by 0x144A20: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==3581305== by 0x1448C0: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==3581305== by 0x144F57: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==3581305== by 0x13FC05: main (TestMonodomainProblem.cpp:19) ==3581305== ==3581305== Open file descriptor 115: ==3581305== ==3581305== ==3581305== Open file descriptor 112: ==3581305== ==3581305== ==3581305== Open file descriptor 4: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestMonodomainProblem_valgrind.txt ==3581305== ==3581305== ==3581305== Open file descriptor 3: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==3581305== ==3581305== ==3581305== ==3581305== HEAP SUMMARY: ==3581305== in use at exit: 836,028 bytes in 11,682 blocks ==3581305== total heap usage: 6,626,509 allocs, 6,614,827 frees, 4,220,356,539 bytes allocated ==3581305== ==3581305== LEAK SUMMARY: ==3581305== definitely lost: 0 bytes in 0 blocks ==3581305== indirectly lost: 0 bytes in 0 blocks ==3581305== possibly lost: 0 bytes in 0 blocks ==3581305== still reachable: 24 bytes in 2 blocks ==3581305== suppressed: 836,004 bytes in 11,680 blocks ==3581305== Reachable blocks (those to which a pointer was found) are not shown. ==3581305== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==3581305== ==3581305== For lists of detected and suppressed errors, rerun with: -s ==3581305== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 129 from 35)