==3565094== Memcheck, a memory error detector ==3565094== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==3565094== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==3565094== Command: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestOffLatticeSimulation3d -malloc_debug -malloc_dump -memory_info ==3565094== Parent PID: 3562972 ==3565094== ==3565094== ==3565094== FILE DESCRIPTORS: 9 open (3 std) at exit. ==3565094== Open file descriptor 12: ==3565094== at 0x10DEA07D: pipe (pipe.c:29) ==3565094== by 0x196B307D: ??? ==3565094== by 0x14C244CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==3565094== by 0x1060B418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==3565094== by 0x105A4D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==3565094== by 0xF29BD38: PetscInitialize (pinit.c:924) ==3565094== by 0xF1022DF: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==3565094== by 0xF10232D: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==3565094== by 0x1FF4E9: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==3565094== by 0x1F945F: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==3565094== by 0x1FC774: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==3565094== by 0x1FC670: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==3565094== by 0x1FCC83: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==3565094== by 0x1F7C55: main (TestOffLatticeSimulation3d.cpp:18) ==3565094== ==3565094== Open file descriptor 8: /dev/shm/open_mpi.0000 ==3565094== at 0x10DEEA1C: __open_nocancel (open64_nocancel.c:39) ==3565094== by 0x10D72BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) ==3565094== by 0xF13D822: ??? ==3565094== by 0xF13D96F: ??? ==3565094== by 0x14CCB6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==3565094== by 0x14CCB938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==3565094== by 0x14C81922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==3565094== by 0x14C242DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==3565094== by 0x1060B418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==3565094== by 0x105A4D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==3565094== by 0xF29BD38: PetscInitialize (pinit.c:924) ==3565094== by 0xF1022DF: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==3565094== by 0xF10232D: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==3565094== by 0x1FF4E9: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==3565094== by 0x1F945F: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==3565094== by 0x1FC774: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==3565094== by 0x1FC670: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==3565094== by 0x1FCC83: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==3565094== by 0x1F7C55: main (TestOffLatticeSimulation3d.cpp:18) ==3565094== ==3565094== Open file descriptor 115: ==3565094== ==3565094== ==3565094== Open file descriptor 112: ==3565094== ==3565094== ==3565094== Open file descriptor 4: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestOffLatticeSimulation3d_valgrind.txt ==3565094== ==3565094== ==3565094== Open file descriptor 3: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==3565094== ==3565094== ==3565094== ==3565094== HEAP SUMMARY: ==3565094== in use at exit: 835,633 bytes in 11,677 blocks ==3565094== total heap usage: 877,648 allocs, 865,971 frees, 1,706,217,036 bytes allocated ==3565094== ==3565094== LEAK SUMMARY: ==3565094== definitely lost: 0 bytes in 0 blocks ==3565094== indirectly lost: 0 bytes in 0 blocks ==3565094== possibly lost: 0 bytes in 0 blocks ==3565094== still reachable: 56 bytes in 3 blocks ==3565094== suppressed: 835,577 bytes in 11,674 blocks ==3565094== Reachable blocks (those to which a pointer was found) are not shown. ==3565094== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==3565094== ==3565094== For lists of detected and suppressed errors, rerun with: -s ==3565094== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37)