==3565488== Memcheck, a memory error detector ==3565488== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==3565488== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==3565488== Command: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestOnLatticeSimulationWithCaBasedCellPopulation -malloc_debug -malloc_dump -memory_info ==3565488== Parent PID: 3562972 ==3565488== ==3565488== ==3565488== FILE DESCRIPTORS: 9 open (3 std) at exit. ==3565488== Open file descriptor 12: ==3565488== at 0xFDB107D: pipe (pipe.c:29) ==3565488== by 0x196B407D: ??? ==3565488== by 0x14DE94CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==3565488== by 0x11A0E418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==3565488== by 0x119A7D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==3565488== by 0x1069ED38: PetscInitialize (pinit.c:924) ==3565488== by 0xF1022DF: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==3565488== by 0xF10232D: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==3565488== by 0x1D4486: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==3565488== by 0x1CDDB9: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==3565488== by 0x1D1554: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==3565488== by 0x1D13F4: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==3565488== by 0x1D1A8B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==3565488== by 0x1CC1D5: main (TestOnLatticeSimulationWithCaBasedCellPopulation.cpp:19) ==3565488== ==3565488== Open file descriptor 8: /dev/shm/open_mpi.0000 ==3565488== at 0xFDB5A1C: __open_nocancel (open64_nocancel.c:39) ==3565488== by 0xFD39BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) ==3565488== by 0xF13D822: ??? ==3565488== by 0xF13D96F: ??? ==3565488== by 0x14E8E6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==3565488== by 0x14E8E938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==3565488== by 0x14E44922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==3565488== by 0x14DE92DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==3565488== by 0x11A0E418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==3565488== by 0x119A7D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==3565488== by 0x1069ED38: PetscInitialize (pinit.c:924) ==3565488== by 0xF1022DF: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==3565488== by 0xF10232D: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==3565488== by 0x1D4486: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==3565488== by 0x1CDDB9: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==3565488== by 0x1D1554: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==3565488== by 0x1D13F4: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==3565488== by 0x1D1A8B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==3565488== by 0x1CC1D5: main (TestOnLatticeSimulationWithCaBasedCellPopulation.cpp:19) ==3565488== ==3565488== Open file descriptor 115: ==3565488== ==3565488== ==3565488== Open file descriptor 112: ==3565488== ==3565488== ==3565488== Open file descriptor 4: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestOnLatticeSimulationWithCaBasedCellPopulation_valgrind.txt ==3565488== ==3565488== ==3565488== Open file descriptor 3: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==3565488== ==3565488== ==3565488== ==3565488== HEAP SUMMARY: ==3565488== in use at exit: 835,564 bytes in 11,673 blocks ==3565488== total heap usage: 7,135,469 allocs, 7,123,796 frees, 8,284,443,490 bytes allocated ==3565488== ==3565488== LEAK SUMMARY: ==3565488== definitely lost: 0 bytes in 0 blocks ==3565488== indirectly lost: 0 bytes in 0 blocks ==3565488== possibly lost: 0 bytes in 0 blocks ==3565488== still reachable: 56 bytes in 3 blocks ==3565488== suppressed: 835,508 bytes in 11,670 blocks ==3565488== Reachable blocks (those to which a pointer was found) are not shown. ==3565488== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==3565488== ==3565488== For lists of detected and suppressed errors, rerun with: -s ==3565488== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 33 from 33)