==3564577== Memcheck, a memory error detector ==3564577== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==3564577== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==3564577== Command: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestTysonNovak2001OdeSystem -malloc_debug -malloc_dump -memory_info ==3564577== Parent PID: 3562972 ==3564577== ==3564577== ==3564577== FILE DESCRIPTORS: 9 open (3 std) at exit. ==3564577== Open file descriptor 12: ==3564577== at 0xDB5A07D: pipe (pipe.c:29) ==3564577== by 0x196B307D: ??? ==3564577== by 0x14C774CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==3564577== by 0x11164418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==3564577== by 0x110FDD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==3564577== by 0xFDF4D38: PetscInitialize (pinit.c:924) ==3564577== by 0xD7552DF: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==3564577== by 0xD75532D: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==3564577== by 0x12417A: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==3564577== by 0x11F743: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==3564577== by 0x121D24: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==3564577== by 0x121C20: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==3564577== by 0x122233: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==3564577== by 0x11DF45: main (TestTysonNovak2001OdeSystem.cpp:18) ==3564577== ==3564577== Open file descriptor 8: /dev/shm/open_mpi.0000 ==3564577== at 0xDB5EA1C: __open_nocancel (open64_nocancel.c:39) ==3564577== by 0xDAE2BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) ==3564577== by 0xD790822: ??? ==3564577== by 0xD79096F: ??? ==3564577== by 0x14D1C6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==3564577== by 0x14D1C938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==3564577== by 0x14CD2922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==3564577== by 0x14C772DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==3564577== by 0x11164418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==3564577== by 0x110FDD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==3564577== by 0xFDF4D38: PetscInitialize (pinit.c:924) ==3564577== by 0xD7552DF: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==3564577== by 0xD75532D: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==3564577== by 0x12417A: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==3564577== by 0x11F743: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==3564577== by 0x121D24: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==3564577== by 0x121C20: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==3564577== by 0x122233: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==3564577== by 0x11DF45: main (TestTysonNovak2001OdeSystem.cpp:18) ==3564577== ==3564577== Open file descriptor 115: ==3564577== ==3564577== ==3564577== Open file descriptor 112: ==3564577== ==3564577== ==3564577== Open file descriptor 4: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestTysonNovak2001OdeSystem_valgrind.txt ==3564577== ==3564577== ==3564577== Open file descriptor 3: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==3564577== ==3564577== ==3564577== ==3564577== HEAP SUMMARY: ==3564577== in use at exit: 835,601 bytes in 11,676 blocks ==3564577== total heap usage: 66,816 allocs, 55,140 frees, 1,541,056,216 bytes allocated ==3564577== ==3564577== LEAK SUMMARY: ==3564577== definitely lost: 0 bytes in 0 blocks ==3564577== indirectly lost: 0 bytes in 0 blocks ==3564577== possibly lost: 0 bytes in 0 blocks ==3564577== still reachable: 24 bytes in 2 blocks ==3564577== suppressed: 835,577 bytes in 11,674 blocks ==3564577== Reachable blocks (those to which a pointer was found) are not shown. ==3564577== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==3564577== ==3564577== For lists of detected and suppressed errors, rerun with: -s ==3564577== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37)