==41647== Memcheck, a memory error detector ==41647== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==41647== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==41647== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/heart/test/TestExtendedVsBidomainProblem -malloc_debug -malloc_dump -memory_info ==41647== Parent PID: 24130 ==41647== ==41647== ==41647== FILE DESCRIPTORS: 9 open (3 std) at exit. ==41647== Open file descriptor 12: ==41647== at 0xAC3407D: pipe (pipe.c:29) ==41647== by 0x1433D07D: ??? ==41647== by 0xFB7B4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==41647== by 0xC32F418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==41647== by 0xC2C8D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==41647== by 0xAFBFD38: PetscInitialize (pinit.c:924) ==41647== by 0xA4D62DF: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==41647== by 0xA4D632D: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==41647== by 0x12E254: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==41647== by 0x128EAD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==41647== by 0x12C1D6: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==41647== by 0x12C076: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==41647== by 0x12C70D: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==41647== by 0x1272D5: main (TestExtendedVsBidomainProblem.cpp:19) ==41647== ==41647== Open file descriptor 8: /dev/shm/open_mpi.0000 ==41647== at 0xAC38A1C: __open_nocancel (open64_nocancel.c:39) ==41647== by 0xABBCBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) ==41647== by 0xA510822: ??? ==41647== by 0xA51096F: ??? ==41647== by 0xFC206DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==41647== by 0xFC20938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==41647== by 0xFBD6922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==41647== by 0xFB7B2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==41647== by 0xC32F418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==41647== by 0xC2C8D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==41647== by 0xAFBFD38: PetscInitialize (pinit.c:924) ==41647== by 0xA4D62DF: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==41647== by 0xA4D632D: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==41647== by 0x12E254: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==41647== by 0x128EAD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==41647== by 0x12C1D6: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==41647== by 0x12C076: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==41647== by 0x12C70D: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==41647== by 0x1272D5: main (TestExtendedVsBidomainProblem.cpp:19) ==41647== ==41647== Open file descriptor 113: ==41647== ==41647== ==41647== Open file descriptor 110: ==41647== ==41647== ==41647== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestExtendedVsBidomainProblem_valgrind.txt ==41647== ==41647== ==41647== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==41647== ==41647== ==41647== ==41647== HEAP SUMMARY: ==41647== in use at exit: 618,890 bytes in 8,249 blocks ==41647== total heap usage: 466,057 allocs, 457,808 frees, 1,446,170,605 bytes allocated ==41647== ==41647== LEAK SUMMARY: ==41647== definitely lost: 0 bytes in 0 blocks ==41647== indirectly lost: 0 bytes in 0 blocks ==41647== possibly lost: 0 bytes in 0 blocks ==41647== still reachable: 120 bytes in 3 blocks ==41647== suppressed: 618,770 bytes in 8,246 blocks ==41647== Reachable blocks (those to which a pointer was found) are not shown. ==41647== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==41647== ==41647== For lists of detected and suppressed errors, rerun with: -s ==41647== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 62 from 36)