==1947616== Memcheck, a memory error detector ==1947616== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==1947616== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==1947616== Command: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestRunningTumourSpheroidSimulationsTutorial -malloc_debug -malloc_dump -memory_info ==1947616== Parent PID: 1931811 ==1947616== ==1947616== ==1947616== FILE DESCRIPTORS: 9 open (3 std) at exit. ==1947616== Open file descriptor 12: ==1947616== at 0xFB9F07D: pipe (pipe.c:29) ==1947616== by 0x196B507D: ??? ==1947616== by 0x14CC94CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==1947616== by 0x114A3418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==1947616== by 0x1143CD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==1947616== by 0x10131D38: PetscInitialize (pinit.c:924) ==1947616== by 0xF49F2DF: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==1947616== by 0xF49F32D: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==1947616== by 0x11CA56: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==1947616== by 0x118313: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==1947616== by 0x11A5FE: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==1947616== by 0x11A4F9: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==1947616== by 0x11AB0D: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==1947616== by 0x116B15: main (TestRunningTumourSpheroidSimulationsTutorial.cpp:18) ==1947616== ==1947616== Open file descriptor 8: /dev/shm/open_mpi.0000 ==1947616== at 0xFBA3A1C: __open_nocancel (open64_nocancel.c:39) ==1947616== by 0xFB27BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) ==1947616== by 0xF4D4822: ??? ==1947616== by 0xF4D496F: ??? ==1947616== by 0x14D6E6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==1947616== by 0x14D6E938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==1947616== by 0x14D24922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==1947616== by 0x14CC92DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==1947616== by 0x114A3418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==1947616== by 0x1143CD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==1947616== by 0x10131D38: PetscInitialize (pinit.c:924) ==1947616== by 0xF49F2DF: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==1947616== by 0xF49F32D: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==1947616== by 0x11CA56: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==1947616== by 0x118313: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==1947616== by 0x11A5FE: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==1947616== by 0x11A4F9: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==1947616== by 0x11AB0D: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==1947616== by 0x116B15: main (TestRunningTumourSpheroidSimulationsTutorial.cpp:18) ==1947616== ==1947616== Open file descriptor 115: ==1947616== ==1947616== ==1947616== Open file descriptor 112: ==1947616== ==1947616== ==1947616== Open file descriptor 4: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestRunningTumourSpheroidSimulationsTutorial_valgrind.txt ==1947616== ==1947616== ==1947616== Open file descriptor 3: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==1947616== ==1947616== ==1947616== ==1947616== HEAP SUMMARY: ==1947616== in use at exit: 995,526 bytes in 13,910 blocks ==1947616== total heap usage: 2,096,849 allocs, 2,082,939 frees, 1,907,953,414 bytes allocated ==1947616== ==1947616== LEAK SUMMARY: ==1947616== definitely lost: 0 bytes in 0 blocks ==1947616== indirectly lost: 0 bytes in 0 blocks ==1947616== possibly lost: 0 bytes in 0 blocks ==1947616== still reachable: 56 bytes in 3 blocks ==1947616== suppressed: 995,470 bytes in 13,907 blocks ==1947616== Reachable blocks (those to which a pointer was found) are not shown. ==1947616== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==1947616== ==1947616== For lists of detected and suppressed errors, rerun with: -s ==1947616== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 33 from 33)