==41513== Memcheck, a memory error detector ==41513== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==41513== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==41513== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/heart/test/TestExtendedBidomainProblem -malloc_debug -malloc_dump -memory_info ==41513== Parent PID: 24022 ==41513== ==41513== ==41513== FILE DESCRIPTORS: 9 open (3 std) at exit. ==41513== Open file descriptor 12: ==41513== at 0xA9CE07D: pipe (pipe.c:29) ==41513== by 0x1433D07D: ??? ==41513== by 0xD95E4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==41513== by 0xA277418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==41513== by 0xA210D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==41513== by 0xAD59D38: PetscInitialize (pinit.c:924) ==41513== by 0xA1392DF: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==41513== by 0xA13932D: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==41513== by 0x124904: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==41513== by 0x11F9B3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==41513== by 0x12261C: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==41513== by 0x122517: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==41513== by 0x122B2B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==41513== by 0x11E1B5: main (TestExtendedBidomainProblem.cpp:18) ==41513== ==41513== Open file descriptor 8: /dev/shm/open_mpi.0000 ==41513== at 0xA9D2A1C: __open_nocancel (open64_nocancel.c:39) ==41513== by 0xA956BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) ==41513== by 0xA173822: ??? ==41513== by 0xA17396F: ??? ==41513== by 0xDA036DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==41513== by 0xDA03938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==41513== by 0xD9B9922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==41513== by 0xD95E2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==41513== by 0xA277418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==41513== by 0xA210D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==41513== by 0xAD59D38: PetscInitialize (pinit.c:924) ==41513== by 0xA1392DF: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==41513== by 0xA13932D: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==41513== by 0x124904: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==41513== by 0x11F9B3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==41513== by 0x12261C: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==41513== by 0x122517: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==41513== by 0x122B2B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==41513== by 0x11E1B5: main (TestExtendedBidomainProblem.cpp:18) ==41513== ==41513== Open file descriptor 113: ==41513== ==41513== ==41513== Open file descriptor 110: ==41513== ==41513== ==41513== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestExtendedBidomainProblem_valgrind.txt ==41513== ==41513== ==41513== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==41513== ==41513== ==41513== ==41513== HEAP SUMMARY: ==41513== in use at exit: 618,825 bytes in 8,245 blocks ==41513== total heap usage: 2,372,928 allocs, 2,364,683 frees, 2,468,279,011 bytes allocated ==41513== ==41513== LEAK SUMMARY: ==41513== definitely lost: 0 bytes in 0 blocks ==41513== indirectly lost: 0 bytes in 0 blocks ==41513== possibly lost: 0 bytes in 0 blocks ==41513== still reachable: 120 bytes in 3 blocks ==41513== suppressed: 618,705 bytes in 8,242 blocks ==41513== Reachable blocks (those to which a pointer was found) are not shown. ==41513== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==41513== ==41513== For lists of detected and suppressed errors, rerun with: -s ==41513== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 39 from 34)