==27415== Memcheck, a memory error detector ==27415== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==27415== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==27415== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestOnLatticeSimulationWithCaBasedCellPopulation -malloc_debug -malloc_dump -memory_info ==27415== Parent PID: 24022 ==27415== ==27415== ==27415== FILE DESCRIPTORS: 9 open (3 std) at exit. ==27415== Open file descriptor 12: ==27415== at 0xFDE307D: pipe (pipe.c:29) ==27415== by 0x196C307D: ??? ==27415== by 0x14E244CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==27415== by 0x11A3F418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==27415== by 0x119D8D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==27415== by 0x106CFD38: PetscInitialize (pinit.c:924) ==27415== by 0xF0FA2DF: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==27415== by 0xF0FA32D: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==27415== by 0x1D4486: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==27415== by 0x1CDDB9: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==27415== by 0x1D1554: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==27415== by 0x1D13F4: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==27415== by 0x1D1A8B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==27415== by 0x1CC1D5: main (TestOnLatticeSimulationWithCaBasedCellPopulation.cpp:19) ==27415== ==27415== Open file descriptor 8: /dev/shm/open_mpi.0000 ==27415== at 0xFDE7A1C: __open_nocancel (open64_nocancel.c:39) ==27415== by 0xFD6BBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) ==27415== by 0xF134822: ??? ==27415== by 0xF13496F: ??? ==27415== by 0x14EC96DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==27415== by 0x14EC9938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==27415== by 0x14E7F922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==27415== by 0x14E242DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==27415== by 0x11A3F418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==27415== by 0x119D8D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==27415== by 0x106CFD38: PetscInitialize (pinit.c:924) ==27415== by 0xF0FA2DF: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==27415== by 0xF0FA32D: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==27415== by 0x1D4486: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==27415== by 0x1CDDB9: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==27415== by 0x1D1554: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==27415== by 0x1D13F4: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==27415== by 0x1D1A8B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==27415== by 0x1CC1D5: main (TestOnLatticeSimulationWithCaBasedCellPopulation.cpp:19) ==27415== ==27415== Open file descriptor 113: ==27415== ==27415== ==27415== Open file descriptor 110: ==27415== ==27415== ==27415== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestOnLatticeSimulationWithCaBasedCellPopulation_valgrind.txt ==27415== ==27415== ==27415== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==27415== ==27415== ==27415== ==27415== HEAP SUMMARY: ==27415== in use at exit: 618,361 bytes in 8,236 blocks ==27415== total heap usage: 7,110,676 allocs, 7,102,440 frees, 8,072,000,844 bytes allocated ==27415== ==27415== LEAK SUMMARY: ==27415== definitely lost: 0 bytes in 0 blocks ==27415== indirectly lost: 0 bytes in 0 blocks ==27415== possibly lost: 0 bytes in 0 blocks ==27415== still reachable: 152 bytes in 4 blocks ==27415== suppressed: 618,209 bytes in 8,232 blocks ==27415== Reachable blocks (those to which a pointer was found) are not shown. ==27415== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==27415== ==27415== For lists of detected and suppressed errors, rerun with: -s ==27415== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 33 from 33)