==40141== Memcheck, a memory error detector ==40141== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==40141== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==40141== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestRunningDeltaNotchSimulationsTutorial -malloc_debug -malloc_dump -memory_info ==40141== Parent PID: 24022 ==40141== ==40141== ==40141== FILE DESCRIPTORS: 9 open (3 std) at exit. ==40141== Open file descriptor 12: ==40141== at 0xF83C07D: pipe (pipe.c:29) ==40141== by 0x196C407D: ??? ==40141== by 0x14D034CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==40141== by 0x114DC418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40141== by 0x11475D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40141== by 0x1016AD38: PetscInitialize (pinit.c:924) ==40141== by 0xF0FA2DF: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==40141== by 0xF0FA32D: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==40141== by 0x122D30: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==40141== by 0x11E513: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==40141== by 0x120830: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==40141== by 0x12072B: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==40141== by 0x120D3F: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==40141== by 0x11CD15: main (TestRunningDeltaNotchSimulationsTutorial.cpp:18) ==40141== ==40141== Open file descriptor 8: /dev/shm/open_mpi.0000 ==40141== at 0xF840A1C: __open_nocancel (open64_nocancel.c:39) ==40141== by 0xF7C4BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) ==40141== by 0xF134822: ??? ==40141== by 0xF13496F: ??? ==40141== by 0x14DA86DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==40141== by 0x14DA8938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==40141== by 0x14D5E922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==40141== by 0x14D032DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==40141== by 0x114DC418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40141== by 0x11475D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40141== by 0x1016AD38: PetscInitialize (pinit.c:924) ==40141== by 0xF0FA2DF: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==40141== by 0xF0FA32D: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==40141== by 0x122D30: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==40141== by 0x11E513: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==40141== by 0x120830: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==40141== by 0x12072B: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==40141== by 0x120D3F: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==40141== by 0x11CD15: main (TestRunningDeltaNotchSimulationsTutorial.cpp:18) ==40141== ==40141== Open file descriptor 113: ==40141== ==40141== ==40141== Open file descriptor 110: ==40141== ==40141== ==40141== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestRunningDeltaNotchSimulationsTutorial_valgrind.txt ==40141== ==40141== ==40141== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==40141== ==40141== ==40141== ==40141== HEAP SUMMARY: ==40141== in use at exit: 618,361 bytes in 8,236 blocks ==40141== total heap usage: 5,177,213 allocs, 5,168,977 frees, 1,778,164,634 bytes allocated ==40141== ==40141== LEAK SUMMARY: ==40141== definitely lost: 0 bytes in 0 blocks ==40141== indirectly lost: 0 bytes in 0 blocks ==40141== possibly lost: 0 bytes in 0 blocks ==40141== still reachable: 152 bytes in 4 blocks ==40141== suppressed: 618,209 bytes in 8,232 blocks ==40141== Reachable blocks (those to which a pointer was found) are not shown. ==40141== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==40141== ==40141== For lists of detected and suppressed errors, rerun with: -s ==40141== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 33 from 33)