==40481== Memcheck, a memory error detector ==40481== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==40481== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==40481== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/crypt/test/TestSimpleCellCycleModelsForCrypt -malloc_debug -malloc_dump -memory_info ==40481== Parent PID: 24022 ==40481== ==40481== ==40481== FILE DESCRIPTORS: 9 open (3 std) at exit. ==40481== Open file descriptor 12: ==40481== at 0x1099A07D: pipe (pipe.c:29) ==40481== by 0x1B38407D: ??? ==40481== by 0x1550E4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==40481== by 0x1025D418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40481== by 0x101F6D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40481== by 0xEEEDD38: PetscInitialize (pinit.c:924) ==40481== by 0xED5F2DF: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==40481== by 0xED5F32D: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==40481== by 0x186CD7: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==40481== by 0x17F2CB: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==40481== by 0x18258E: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==40481== by 0x18242E: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==40481== by 0x182AC5: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==40481== by 0x17BBF5: main (TestSimpleCellCycleModelsForCrypt.cpp:19) ==40481== ==40481== Open file descriptor 8: /dev/shm/open_mpi.0000 ==40481== at 0x1099EA1C: __open_nocancel (open64_nocancel.c:39) ==40481== by 0x10922BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) ==40481== by 0xED99822: ??? ==40481== by 0xED9996F: ??? ==40481== by 0x155B36DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==40481== by 0x155B3938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==40481== by 0x15569922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==40481== by 0x1550E2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==40481== by 0x1025D418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40481== by 0x101F6D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40481== by 0xEEEDD38: PetscInitialize (pinit.c:924) ==40481== by 0xED5F2DF: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==40481== by 0xED5F32D: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==40481== by 0x186CD7: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==40481== by 0x17F2CB: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==40481== by 0x18258E: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==40481== by 0x18242E: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==40481== by 0x182AC5: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==40481== by 0x17BBF5: main (TestSimpleCellCycleModelsForCrypt.cpp:19) ==40481== ==40481== Open file descriptor 113: ==40481== ==40481== ==40481== Open file descriptor 110: ==40481== ==40481== ==40481== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestSimpleCellCycleModelsForCrypt_valgrind.txt ==40481== ==40481== ==40481== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==40481== ==40481== ==40481== ==40481== HEAP SUMMARY: ==40481== in use at exit: 618,514 bytes in 8,241 blocks ==40481== total heap usage: 753,779 allocs, 745,538 frees, 1,372,601,210 bytes allocated ==40481== ==40481== LEAK SUMMARY: ==40481== definitely lost: 0 bytes in 0 blocks ==40481== indirectly lost: 0 bytes in 0 blocks ==40481== possibly lost: 0 bytes in 0 blocks ==40481== still reachable: 216 bytes in 5 blocks ==40481== suppressed: 618,298 bytes in 8,236 blocks ==40481== Reachable blocks (those to which a pointer was found) are not shown. ==40481== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==40481== ==40481== For lists of detected and suppressed errors, rerun with: -s ==40481== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37)