==25936== Memcheck, a memory error detector ==25936== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==25936== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==25936== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestTysonNovak2001OdeSystem -malloc_debug -malloc_dump -memory_info ==25936== Parent PID: 24022 ==25936== ==25936== ==25936== FILE DESCRIPTORS: 9 open (3 std) at exit. ==25936== Open file descriptor 12: ==25936== at 0xDB9307D: pipe (pipe.c:29) ==25936== by 0x196C407D: ??? ==25936== by 0x14CB44CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==25936== by 0x11195418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==25936== by 0x1112ED7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==25936== by 0xFE25D38: PetscInitialize (pinit.c:924) ==25936== by 0xD7542DF: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==25936== by 0xD75432D: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==25936== by 0x12417A: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==25936== by 0x11F743: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==25936== by 0x121D24: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==25936== by 0x121C20: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==25936== by 0x122233: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==25936== by 0x11DF45: main (TestTysonNovak2001OdeSystem.cpp:18) ==25936== ==25936== Open file descriptor 8: /dev/shm/open_mpi.0000 ==25936== at 0xDB97A1C: __open_nocancel (open64_nocancel.c:39) ==25936== by 0xDB1BBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) ==25936== by 0xD78E822: ??? ==25936== by 0xD78E96F: ??? ==25936== by 0x14D596DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==25936== by 0x14D59938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==25936== by 0x14D0F922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==25936== by 0x14CB42DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==25936== by 0x11195418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==25936== by 0x1112ED7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==25936== by 0xFE25D38: PetscInitialize (pinit.c:924) ==25936== by 0xD7542DF: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==25936== by 0xD75432D: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==25936== by 0x12417A: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==25936== by 0x11F743: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==25936== by 0x121D24: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==25936== by 0x121C20: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==25936== by 0x122233: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==25936== by 0x11DF45: main (TestTysonNovak2001OdeSystem.cpp:18) ==25936== ==25936== Open file descriptor 113: ==25936== ==25936== ==25936== Open file descriptor 110: ==25936== ==25936== ==25936== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestTysonNovak2001OdeSystem_valgrind.txt ==25936== ==25936== ==25936== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==25936== ==25936== ==25936== ==25936== HEAP SUMMARY: ==25936== in use at exit: 618,402 bytes in 8,239 blocks ==25936== total heap usage: 58,414 allocs, 50,175 frees, 1,339,308,514 bytes allocated ==25936== ==25936== LEAK SUMMARY: ==25936== definitely lost: 0 bytes in 0 blocks ==25936== indirectly lost: 0 bytes in 0 blocks ==25936== possibly lost: 0 bytes in 0 blocks ==25936== still reachable: 120 bytes in 3 blocks ==25936== suppressed: 618,282 bytes in 8,236 blocks ==25936== Reachable blocks (those to which a pointer was found) are not shown. ==25936== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==25936== ==25936== For lists of detected and suppressed errors, rerun with: -s ==25936== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37)