==27133== Memcheck, a memory error detector ==27133== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==27133== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==27133== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestOffLatticeSimulationWithVertexBasedCellPopulation -malloc_debug -malloc_dump -memory_info ==27133== Parent PID: 24022 ==27133== ==27133== ==27133== FILE DESCRIPTORS: 9 open (3 std) at exit. ==27133== Open file descriptor 12: ==27133== at 0x10E1C07D: pipe (pipe.c:29) ==27133== by 0x196C507D: ??? ==27133== by 0x14C654CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==27133== by 0x105F8418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==27133== by 0x10591D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==27133== by 0xF288D38: PetscInitialize (pinit.c:924) ==27133== by 0xF0FA2DF: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==27133== by 0xF0FA32D: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==27133== by 0x1FFF0F: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==27133== by 0x1F9AB9: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==27133== by 0x1FD424: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==27133== by 0x1FD2C4: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==27133== by 0x1FD95B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==27133== by 0x1F7ED5: main (TestOffLatticeSimulationWithVertexBasedCellPopulation.cpp:19) ==27133== ==27133== Open file descriptor 8: /dev/shm/open_mpi.0000 ==27133== at 0x10E20A1C: __open_nocancel (open64_nocancel.c:39) ==27133== by 0x10DA4BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) ==27133== by 0xF134822: ??? ==27133== by 0xF13496F: ??? ==27133== by 0x14D0A6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==27133== by 0x14D0A938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==27133== by 0x14CC0922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==27133== by 0x14C652DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==27133== by 0x105F8418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==27133== by 0x10591D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==27133== by 0xF288D38: PetscInitialize (pinit.c:924) ==27133== by 0xF0FA2DF: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==27133== by 0xF0FA32D: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==27133== by 0x1FFF0F: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==27133== by 0x1F9AB9: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==27133== by 0x1FD424: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==27133== by 0x1FD2C4: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==27133== by 0x1FD95B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==27133== by 0x1F7ED5: main (TestOffLatticeSimulationWithVertexBasedCellPopulation.cpp:19) ==27133== ==27133== Open file descriptor 113: ==27133== ==27133== ==27133== Open file descriptor 110: ==27133== ==27133== ==27133== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestOffLatticeSimulationWithVertexBasedCellPopulation_valgrind.txt ==27133== ==27133== ==27133== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==27133== ==27133== ==27133== ==27133== HEAP SUMMARY: ==27133== in use at exit: 618,361 bytes in 8,236 blocks ==27133== total heap usage: 9,703,045 allocs, 9,694,809 frees, 2,583,520,154 bytes allocated ==27133== ==27133== LEAK SUMMARY: ==27133== definitely lost: 0 bytes in 0 blocks ==27133== indirectly lost: 0 bytes in 0 blocks ==27133== possibly lost: 0 bytes in 0 blocks ==27133== still reachable: 152 bytes in 4 blocks ==27133== suppressed: 618,209 bytes in 8,232 blocks ==27133== Reachable blocks (those to which a pointer was found) are not shown. ==27133== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==27133== ==27133== For lists of detected and suppressed errors, rerun with: -s ==27133== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 33 from 33)