==39975== Memcheck, a memory error detector ==39975== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==39975== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==39975== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestRunningDifferentialAdhesionSimulationsTutorial -malloc_debug -malloc_dump -memory_info ==39975== Parent PID: 24022 ==39975== ==39975== ==39975== FILE DESCRIPTORS: 9 open (3 std) at exit. ==39975== Open file descriptor 12: ==39975== at 0x10CF307D: pipe (pipe.c:29) ==39975== by 0x196C507D: ??? ==39975== by 0x14C654CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==39975== by 0x105B6418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==39975== by 0x1054FD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==39975== by 0xF223D38: PetscInitialize (pinit.c:924) ==39975== by 0xF0FA2DF: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==39975== by 0xF0FA32D: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==39975== by 0x123D23: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==39975== by 0x11F693: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==39975== by 0x1218FC: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==39975== by 0x1217F8: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==39975== by 0x121E0B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==39975== by 0x11DE95: main (TestRunningDifferentialAdhesionSimulationsTutorial.cpp:18) ==39975== ==39975== Open file descriptor 8: /dev/shm/open_mpi.0000 ==39975== at 0x10CF7A1C: __open_nocancel (open64_nocancel.c:39) ==39975== by 0x10C7BBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) ==39975== by 0x104B2822: ??? ==39975== by 0x104B296F: ??? ==39975== by 0x14D0A6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==39975== by 0x14D0A938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==39975== by 0x14CC0922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==39975== by 0x14C652DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==39975== by 0x105B6418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==39975== by 0x1054FD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==39975== by 0xF223D38: PetscInitialize (pinit.c:924) ==39975== by 0xF0FA2DF: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==39975== by 0xF0FA32D: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==39975== by 0x123D23: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==39975== by 0x11F693: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==39975== by 0x1218FC: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==39975== by 0x1217F8: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==39975== by 0x121E0B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==39975== by 0x11DE95: main (TestRunningDifferentialAdhesionSimulationsTutorial.cpp:18) ==39975== ==39975== Open file descriptor 113: ==39975== ==39975== ==39975== Open file descriptor 110: ==39975== ==39975== ==39975== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestRunningDifferentialAdhesionSimulationsTutorial_valgrind.txt ==39975== ==39975== ==39975== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==39975== ==39975== ==39975== ==39975== HEAP SUMMARY: ==39975== in use at exit: 618,377 bytes in 8,237 blocks ==39975== total heap usage: 2,563,995 allocs, 2,555,758 frees, 1,463,684,046 bytes allocated ==39975== ==39975== LEAK SUMMARY: ==39975== definitely lost: 0 bytes in 0 blocks ==39975== indirectly lost: 0 bytes in 0 blocks ==39975== possibly lost: 0 bytes in 0 blocks ==39975== still reachable: 168 bytes in 5 blocks ==39975== suppressed: 618,209 bytes in 8,232 blocks ==39975== Reachable blocks (those to which a pointer was found) are not shown. ==39975== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==39975== ==39975== For lists of detected and suppressed errors, rerun with: -s ==39975== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 33 from 33)