==40846== Memcheck, a memory error detector ==40846== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==40846== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==40846== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/crypt/test/TestRunningMeshBasedCryptSimulationsTutorial -malloc_debug -malloc_dump -memory_info ==40846== Parent PID: 24022 ==40846== ==40846== ==40846== FILE DESCRIPTORS: 9 open (3 std) at exit. ==40846== Open file descriptor 12: ==40846== at 0x125B307D: pipe (pipe.c:29) ==40846== by 0x1B38507D: ??? ==40846== by 0x1652A4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==40846== by 0x11E76418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40846== by 0x11E0FD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40846== by 0x10AE3D38: PetscInitialize (pinit.c:924) ==40846== by 0x109BA2DF: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==40846== by 0x109BA32D: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==40846== by 0x120E0B: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==40846== by 0x11C633: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==40846== by 0x11E8CE: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==40846== by 0x11E7CA: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==40846== by 0x11EDDD: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==40846== by 0x11AE35: main (TestRunningMeshBasedCryptSimulationsTutorial.cpp:18) ==40846== ==40846== Open file descriptor 8: /dev/shm/open_mpi.0000 ==40846== at 0x125B7A1C: __open_nocancel (open64_nocancel.c:39) ==40846== by 0x1253BBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) ==40846== by 0x11D72822: ??? ==40846== by 0x11D7296F: ??? ==40846== by 0x165CF6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==40846== by 0x165CF938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==40846== by 0x16585922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==40846== by 0x1652A2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==40846== by 0x11E76418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40846== by 0x11E0FD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40846== by 0x10AE3D38: PetscInitialize (pinit.c:924) ==40846== by 0x109BA2DF: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==40846== by 0x109BA32D: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==40846== by 0x120E0B: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==40846== by 0x11C633: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==40846== by 0x11E8CE: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==40846== by 0x11E7CA: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==40846== by 0x11EDDD: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==40846== by 0x11AE35: main (TestRunningMeshBasedCryptSimulationsTutorial.cpp:18) ==40846== ==40846== Open file descriptor 113: ==40846== ==40846== ==40846== Open file descriptor 110: ==40846== ==40846== ==40846== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestRunningMeshBasedCryptSimulationsTutorial_valgrind.txt ==40846== ==40846== ==40846== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==40846== ==40846== ==40846== ==40846== HEAP SUMMARY: ==40846== in use at exit: 618,450 bytes in 8,240 blocks ==40846== total heap usage: 1,753,596 allocs, 1,745,356 frees, 1,514,889,467 bytes allocated ==40846== ==40846== LEAK SUMMARY: ==40846== definitely lost: 0 bytes in 0 blocks ==40846== indirectly lost: 0 bytes in 0 blocks ==40846== possibly lost: 0 bytes in 0 blocks ==40846== still reachable: 152 bytes in 4 blocks ==40846== suppressed: 618,298 bytes in 8,236 blocks ==40846== Reachable blocks (those to which a pointer was found) are not shown. ==40846== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==40846== ==40846== For lists of detected and suppressed errors, rerun with: -s ==40846== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37)