==44017== Memcheck, a memory error detector ==44017== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==44017== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==44017== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/heart/test/TestCheckpointing -malloc_debug -malloc_dump -memory_info ==44017== Parent PID: 24151 ==44017== ==44017== ==44017== FILE DESCRIPTORS: 9 open (3 std) at exit. ==44017== Open file descriptor 12: ==44017== at 0xA80807D: pipe (pipe.c:29) ==44017== by 0x1433E07D: ??? ==44017== by 0xFB7B4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==44017== by 0xBF01418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==44017== by 0xBE9AD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==44017== by 0xAB91D38: PetscInitialize (pinit.c:924) ==44017== by 0xA0AA2DF: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==44017== by 0xA0AA32D: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==44017== by 0x1239FA: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==44017== by 0x11E4F3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==44017== by 0x120D74: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==44017== by 0x120C6F: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==44017== by 0x121283: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==44017== by 0x11CCF5: main (TestCheckpointing.cpp:18) ==44017== ==44017== Open file descriptor 8: /dev/shm/open_mpi.0000 ==44017== at 0xA80CA1C: __open_nocancel (open64_nocancel.c:39) ==44017== by 0xA790BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) ==44017== by 0xA0E4822: ??? ==44017== by 0xA0E496F: ??? ==44017== by 0xFC206DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==44017== by 0xFC20938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==44017== by 0xFBD6922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==44017== by 0xFB7B2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==44017== by 0xBF01418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==44017== by 0xBE9AD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==44017== by 0xAB91D38: PetscInitialize (pinit.c:924) ==44017== by 0xA0AA2DF: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==44017== by 0xA0AA32D: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==44017== by 0x1239FA: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==44017== by 0x11E4F3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==44017== by 0x120D74: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==44017== by 0x120C6F: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==44017== by 0x121283: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==44017== by 0x11CCF5: main (TestCheckpointing.cpp:18) ==44017== ==44017== Open file descriptor 114: ==44017== ==44017== ==44017== Open file descriptor 111: ==44017== ==44017== ==44017== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestCheckpointing_valgrind.txt ==44017== ==44017== ==44017== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==44017== ==44017== ==44017== ==44017== HEAP SUMMARY: ==44017== in use at exit: 618,825 bytes in 8,245 blocks ==44017== total heap usage: 834,336 allocs, 826,091 frees, 1,443,152,052 bytes allocated ==44017== ==44017== LEAK SUMMARY: ==44017== definitely lost: 0 bytes in 0 blocks ==44017== indirectly lost: 0 bytes in 0 blocks ==44017== possibly lost: 0 bytes in 0 blocks ==44017== still reachable: 120 bytes in 3 blocks ==44017== suppressed: 618,705 bytes in 8,242 blocks ==44017== Reachable blocks (those to which a pointer was found) are not shown. ==44017== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==44017== ==44017== For lists of detected and suppressed errors, rerun with: -s ==44017== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 60 from 34)