==39939== Memcheck, a memory error detector ==39939== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==39939== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==39939== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestCreatingAndUsingANewCellBasedSimulationModifierTutorial -malloc_debug -malloc_dump -memory_info ==39939== Parent PID: 24151 ==39939== ==39939== ==39939== FILE DESCRIPTORS: 9 open (3 std) at exit. ==39939== Open file descriptor 12: ==39939== at 0x10D3507D: pipe (pipe.c:29) ==39939== by 0x196C507D: ??? ==39939== by 0x14C654CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==39939== by 0x105F8418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==39939== by 0x10591D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==39939== by 0xF288D38: PetscInitialize (pinit.c:924) ==39939== by 0xF0FA2DF: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==39939== by 0xF0FA32D: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==39939== by 0x13161D: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==39939== by 0x12C98F: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==39939== by 0x12EEE0: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==39939== by 0x12EDDB: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==39939== by 0x12F3EF: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==39939== by 0x12B185: main (TestCreatingAndUsingANewCellBasedSimulationModifierTutorial.cpp:18) ==39939== ==39939== Open file descriptor 8: /dev/shm/open_mpi.0000 ==39939== at 0x10D39A1C: __open_nocancel (open64_nocancel.c:39) ==39939== by 0x10CBDBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) ==39939== by 0xF134822: ??? ==39939== by 0xF13496F: ??? ==39939== by 0x14D0A6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==39939== by 0x14D0A938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==39939== by 0x14CC0922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==39939== by 0x14C652DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==39939== by 0x105F8418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==39939== by 0x10591D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==39939== by 0xF288D38: PetscInitialize (pinit.c:924) ==39939== by 0xF0FA2DF: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==39939== by 0xF0FA32D: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==39939== by 0x13161D: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==39939== by 0x12C98F: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==39939== by 0x12EEE0: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==39939== by 0x12EDDB: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==39939== by 0x12F3EF: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==39939== by 0x12B185: main (TestCreatingAndUsingANewCellBasedSimulationModifierTutorial.cpp:18) ==39939== ==39939== Open file descriptor 114: ==39939== ==39939== ==39939== Open file descriptor 111: ==39939== ==39939== ==39939== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestCreatingAndUsingANewCellBasedSimulationModifierTutorial_valgrind.txt ==39939== ==39939== ==39939== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==39939== ==39939== ==39939== ==39939== HEAP SUMMARY: ==39939== in use at exit: 618,434 bytes in 8,240 blocks ==39939== total heap usage: 514,145 allocs, 505,905 frees, 1,651,559,058 bytes allocated ==39939== ==39939== LEAK SUMMARY: ==39939== definitely lost: 0 bytes in 0 blocks ==39939== indirectly lost: 0 bytes in 0 blocks ==39939== possibly lost: 0 bytes in 0 blocks ==39939== still reachable: 152 bytes in 4 blocks ==39939== suppressed: 618,282 bytes in 8,236 blocks ==39939== Reachable blocks (those to which a pointer was found) are not shown. ==39939== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==39939== ==39939== For lists of detected and suppressed errors, rerun with: -s ==39939== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37)