==40462== Memcheck, a memory error detector ==40462== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==40462== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==40462== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestRunningNodeBasedSimulationsTutorial -malloc_debug -malloc_dump -memory_info ==40462== Parent PID: 24151 ==40462== ==40462== ==40462== FILE DESCRIPTORS: 9 open (3 std) at exit. ==40462== Open file descriptor 12: ==40462== at 0xF92307D: pipe (pipe.c:29) ==40462== by 0x196C507D: ??? ==40462== by 0x14D034CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==40462== by 0x115C3418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40462== by 0x1155CD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40462== by 0x10253D38: PetscInitialize (pinit.c:924) ==40462== by 0xF0FA2DF: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==40462== by 0xF0FA32D: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==40462== by 0x12C638: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==40462== by 0x127BAD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==40462== by 0x12A25C: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==40462== by 0x12A0FC: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==40462== by 0x12A793: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==40462== by 0x125FD5: main (TestRunningNodeBasedSimulationsTutorial.cpp:19) ==40462== ==40462== Open file descriptor 8: /dev/shm/open_mpi.0000 ==40462== at 0xF927A1C: __open_nocancel (open64_nocancel.c:39) ==40462== by 0xF8ABBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) ==40462== by 0xF134822: ??? ==40462== by 0xF13496F: ??? ==40462== by 0x14DA86DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==40462== by 0x14DA8938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==40462== by 0x14D5E922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==40462== by 0x14D032DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==40462== by 0x115C3418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40462== by 0x1155CD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40462== by 0x10253D38: PetscInitialize (pinit.c:924) ==40462== by 0xF0FA2DF: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==40462== by 0xF0FA32D: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==40462== by 0x12C638: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==40462== by 0x127BAD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==40462== by 0x12A25C: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==40462== by 0x12A0FC: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==40462== by 0x12A793: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==40462== by 0x125FD5: main (TestRunningNodeBasedSimulationsTutorial.cpp:19) ==40462== ==40462== Open file descriptor 114: ==40462== ==40462== ==40462== Open file descriptor 111: ==40462== ==40462== ==40462== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestRunningNodeBasedSimulationsTutorial_valgrind.txt ==40462== ==40462== ==40462== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==40462== ==40462== ==40462== ==40462== HEAP SUMMARY: ==40462== in use at exit: 618,434 bytes in 8,240 blocks ==40462== total heap usage: 672,358 allocs, 664,118 frees, 1,725,076,416 bytes allocated ==40462== ==40462== LEAK SUMMARY: ==40462== definitely lost: 0 bytes in 0 blocks ==40462== indirectly lost: 0 bytes in 0 blocks ==40462== possibly lost: 0 bytes in 0 blocks ==40462== still reachable: 152 bytes in 4 blocks ==40462== suppressed: 618,282 bytes in 8,236 blocks ==40462== Reachable blocks (those to which a pointer was found) are not shown. ==40462== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==40462== ==40462== For lists of detected and suppressed errors, rerun with: -s ==40462== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37)