==26034== Memcheck, a memory error detector ==26034== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==26034== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==26034== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestTysonNovak2001OdeSystem -malloc_debug -malloc_dump -memory_info ==26034== Parent PID: 24151 ==26034== ==26034== ==26034== FILE DESCRIPTORS: 9 open (3 std) at exit. ==26034== Open file descriptor 12: ==26034== at 0xDB9307D: pipe (pipe.c:29) ==26034== by 0x196C507D: ??? ==26034== by 0x14CB44CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==26034== by 0x11195418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==26034== by 0x1112ED7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==26034== by 0xFE25D38: PetscInitialize (pinit.c:924) ==26034== by 0xD7542DF: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==26034== by 0xD75432D: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==26034== by 0x12417A: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==26034== by 0x11F743: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==26034== by 0x121D24: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==26034== by 0x121C20: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==26034== by 0x122233: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==26034== by 0x11DF45: main (TestTysonNovak2001OdeSystem.cpp:18) ==26034== ==26034== Open file descriptor 8: /dev/shm/open_mpi.0000 ==26034== at 0xDB97A1C: __open_nocancel (open64_nocancel.c:39) ==26034== by 0xDB1BBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) ==26034== by 0xD78E822: ??? ==26034== by 0xD78E96F: ??? ==26034== by 0x14D596DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==26034== by 0x14D59938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==26034== by 0x14D0F922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==26034== by 0x14CB42DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==26034== by 0x11195418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==26034== by 0x1112ED7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==26034== by 0xFE25D38: PetscInitialize (pinit.c:924) ==26034== by 0xD7542DF: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==26034== by 0xD75432D: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==26034== by 0x12417A: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==26034== by 0x11F743: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==26034== by 0x121D24: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==26034== by 0x121C20: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==26034== by 0x122233: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==26034== by 0x11DF45: main (TestTysonNovak2001OdeSystem.cpp:18) ==26034== ==26034== Open file descriptor 114: ==26034== ==26034== ==26034== Open file descriptor 111: ==26034== ==26034== ==26034== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestTysonNovak2001OdeSystem_valgrind.txt ==26034== ==26034== ==26034== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==26034== ==26034== ==26034== ==26034== HEAP SUMMARY: ==26034== in use at exit: 618,402 bytes in 8,239 blocks ==26034== total heap usage: 58,414 allocs, 50,175 frees, 1,339,308,449 bytes allocated ==26034== ==26034== LEAK SUMMARY: ==26034== definitely lost: 0 bytes in 0 blocks ==26034== indirectly lost: 0 bytes in 0 blocks ==26034== possibly lost: 0 bytes in 0 blocks ==26034== still reachable: 120 bytes in 3 blocks ==26034== suppressed: 618,282 bytes in 8,236 blocks ==26034== Reachable blocks (those to which a pointer was found) are not shown. ==26034== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==26034== ==26034== For lists of detected and suppressed errors, rerun with: -s ==26034== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37)