==39978== Memcheck, a memory error detector ==39978== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==39978== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==39978== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestCreatingAndUsingANewCellMutationStateTutorial -malloc_debug -malloc_dump -memory_info ==39978== Parent PID: 24104 ==39978== ==39978== ==39978== FILE DESCRIPTORS: 9 open (3 std) at exit. ==39978== Open file descriptor 12: ==39978== at 0x10D3507D: pipe (pipe.c:29) ==39978== by 0x196C507D: ??? ==39978== by 0x14C654CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==39978== by 0x105F8418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==39978== by 0x10591D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==39978== by 0xF288D38: PetscInitialize (pinit.c:924) ==39978== by 0xF0FA2DF: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==39978== by 0xF0FA32D: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==39978== by 0x149987: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==39978== by 0x1442D9: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==39978== by 0x146FD2: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==39978== by 0x146E72: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==39978== by 0x147509: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==39978== by 0x1426F5: main (TestCreatingAndUsingANewCellMutationStateTutorial.cpp:19) ==39978== ==39978== Open file descriptor 8: /dev/shm/open_mpi.0000 ==39978== at 0x10D39A1C: __open_nocancel (open64_nocancel.c:39) ==39978== by 0x10CBDBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) ==39978== by 0xF134822: ??? ==39978== by 0xF13496F: ??? ==39978== by 0x14D0A6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==39978== by 0x14D0A938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==39978== by 0x14CC0922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==39978== by 0x14C652DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==39978== by 0x105F8418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==39978== by 0x10591D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==39978== by 0xF288D38: PetscInitialize (pinit.c:924) ==39978== by 0xF0FA2DF: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==39978== by 0xF0FA32D: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==39978== by 0x149987: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==39978== by 0x1442D9: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==39978== by 0x146FD2: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==39978== by 0x146E72: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==39978== by 0x147509: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==39978== by 0x1426F5: main (TestCreatingAndUsingANewCellMutationStateTutorial.cpp:19) ==39978== ==39978== Open file descriptor 113: ==39978== ==39978== ==39978== Open file descriptor 110: ==39978== ==39978== ==39978== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestCreatingAndUsingANewCellMutationStateTutorial_valgrind.txt ==39978== ==39978== ==39978== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==39978== ==39978== ==39978== ==39978== HEAP SUMMARY: ==39978== in use at exit: 618,361 bytes in 8,236 blocks ==39978== total heap usage: 4,262,892 allocs, 4,254,656 frees, 1,898,469,201 bytes allocated ==39978== ==39978== LEAK SUMMARY: ==39978== definitely lost: 0 bytes in 0 blocks ==39978== indirectly lost: 0 bytes in 0 blocks ==39978== possibly lost: 0 bytes in 0 blocks ==39978== still reachable: 152 bytes in 4 blocks ==39978== suppressed: 618,209 bytes in 8,232 blocks ==39978== Reachable blocks (those to which a pointer was found) are not shown. ==39978== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==39978== ==39978== For lists of detected and suppressed errors, rerun with: -s ==39978== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 33 from 33)