==43629== Memcheck, a memory error detector ==43629== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==43629== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==43629== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/heart/test/TestMonodomainProblem -malloc_debug -malloc_dump -memory_info ==43629== Parent PID: 24104 ==43629== ==43629== Warning: invalid file descriptor -1 in syscall close() ==43629== ==43629== FILE DESCRIPTORS: 9 open (3 std) at exit. ==43629== Open file descriptor 12: ==43629== at 0xC14507D: pipe (pipe.c:29) ==43629== by 0x1433F07D: ??? ==43629== by 0x1003B4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==43629== by 0xB9EE418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==43629== by 0xB987D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==43629== by 0xA2C9D38: PetscInitialize (pinit.c:924) ==43629== by 0xA1392DF: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==43629== by 0xA13932D: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==43629== by 0x14A2B6: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==43629== by 0x14182D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==43629== by 0x144A20: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==43629== by 0x1448C0: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==43629== by 0x144F57: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==43629== by 0x13FC05: main (TestMonodomainProblem.cpp:19) ==43629== ==43629== Open file descriptor 8: /dev/shm/open_mpi.0000 ==43629== at 0xC149A1C: __open_nocancel (open64_nocancel.c:39) ==43629== by 0xC0CDBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) ==43629== by 0xA173822: ??? ==43629== by 0xA17396F: ??? ==43629== by 0x100E06DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==43629== by 0x100E0938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==43629== by 0x10096922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==43629== by 0x1003B2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==43629== by 0xB9EE418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==43629== by 0xB987D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==43629== by 0xA2C9D38: PetscInitialize (pinit.c:924) ==43629== by 0xA1392DF: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==43629== by 0xA13932D: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==43629== by 0x14A2B6: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==43629== by 0x14182D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==43629== by 0x144A20: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==43629== by 0x1448C0: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==43629== by 0x144F57: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==43629== by 0x13FC05: main (TestMonodomainProblem.cpp:19) ==43629== ==43629== Open file descriptor 113: ==43629== ==43629== ==43629== Open file descriptor 110: ==43629== ==43629== ==43629== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestMonodomainProblem_valgrind.txt ==43629== ==43629== ==43629== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==43629== ==43629== ==43629== ==43629== HEAP SUMMARY: ==43629== in use at exit: 618,825 bytes in 8,245 blocks ==43629== total heap usage: 6,613,791 allocs, 6,605,546 frees, 4,016,607,019 bytes allocated ==43629== ==43629== LEAK SUMMARY: ==43629== definitely lost: 0 bytes in 0 blocks ==43629== indirectly lost: 0 bytes in 0 blocks ==43629== possibly lost: 0 bytes in 0 blocks ==43629== still reachable: 120 bytes in 3 blocks ==43629== suppressed: 618,705 bytes in 8,242 blocks ==43629== Reachable blocks (those to which a pointer was found) are not shown. ==43629== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==43629== ==43629== For lists of detected and suppressed errors, rerun with: -s ==43629== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 126 from 32)