==40339== Memcheck, a memory error detector ==40339== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==40339== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==40339== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/crypt/test/TestCellBetaCateninWriter -malloc_debug -malloc_dump -memory_info ==40339== Parent PID: 24006 ==40339== ==40339== ==40339== FILE DESCRIPTORS: 9 open (3 std) at exit. ==40339== Open file descriptor 12: ==40339== at 0x1114007D: pipe (pipe.c:29) ==40339== by 0x1B38507D: ??? ==40339== by 0x165C84CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==40339== by 0x12E83418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40339== by 0x12E1CD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40339== by 0x11B13D38: PetscInitialize (pinit.c:924) ==40339== by 0x109BA2DF: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==40339== by 0x109BA32D: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==40339== by 0x136F12: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==40339== by 0x130103: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==40339== by 0x132B56: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==40339== by 0x132A51: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==40339== by 0x133065: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==40339== by 0x12E905: main (TestCellBetaCateninWriter.cpp:18) ==40339== ==40339== Open file descriptor 8: /dev/shm/open_mpi.0000 ==40339== at 0x11144A1C: __open_nocancel (open64_nocancel.c:39) ==40339== by 0x110C8BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) ==40339== by 0x109EF822: ??? ==40339== by 0x109EF96F: ??? ==40339== by 0x1666D6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==40339== by 0x1666D938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==40339== by 0x16623922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==40339== by 0x165C82DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==40339== by 0x12E83418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40339== by 0x12E1CD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40339== by 0x11B13D38: PetscInitialize (pinit.c:924) ==40339== by 0x109BA2DF: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==40339== by 0x109BA32D: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==40339== by 0x136F12: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==40339== by 0x130103: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==40339== by 0x132B56: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==40339== by 0x132A51: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==40339== by 0x133065: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==40339== by 0x12E905: main (TestCellBetaCateninWriter.cpp:18) ==40339== ==40339== Open file descriptor 113: ==40339== ==40339== ==40339== Open file descriptor 110: ==40339== ==40339== ==40339== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestCellBetaCateninWriter_valgrind.txt ==40339== ==40339== ==40339== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==40339== ==40339== ==40339== ==40339== HEAP SUMMARY: ==40339== in use at exit: 618,542 bytes in 8,241 blocks ==40339== total heap usage: 63,265 allocs, 55,024 frees, 1,341,075,771 bytes allocated ==40339== ==40339== LEAK SUMMARY: ==40339== definitely lost: 0 bytes in 0 blocks ==40339== indirectly lost: 0 bytes in 0 blocks ==40339== possibly lost: 0 bytes in 0 blocks ==40339== still reachable: 232 bytes in 5 blocks ==40339== suppressed: 618,310 bytes in 8,236 blocks ==40339== Reachable blocks (those to which a pointer was found) are not shown. ==40339== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==40339== ==40339== For lists of detected and suppressed errors, rerun with: -s ==40339== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37)