==40367== Memcheck, a memory error detector ==40367== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==40367== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==40367== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/crypt/test/TestVertexBasedCellPopulationForCrypt -malloc_debug -malloc_dump -memory_info ==40367== Parent PID: 24006 ==40367== ==40367== ==40367== FILE DESCRIPTORS: 9 open (3 std) at exit. ==40367== Open file descriptor 12: ==40367== at 0x125B307D: pipe (pipe.c:29) ==40367== by 0x1B38507D: ??? ==40367== by 0x1652A4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==40367== by 0x11E76418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40367== by 0x11E0FD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40367== by 0x10AE3D38: PetscInitialize (pinit.c:924) ==40367== by 0x109BA2DF: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==40367== by 0x109BA32D: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==40367== by 0x11D953: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==40367== by 0x119133: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==40367== by 0x11B52C: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==40367== by 0x11B427: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==40367== by 0x11BA3B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==40367== by 0x117935: main (TestVertexBasedCellPopulationForCrypt.cpp:18) ==40367== ==40367== Open file descriptor 8: /dev/shm/open_mpi.0000 ==40367== at 0x125B7A1C: __open_nocancel (open64_nocancel.c:39) ==40367== by 0x1253BBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) ==40367== by 0x11D6D822: ??? ==40367== by 0x11D6D96F: ??? ==40367== by 0x165CF6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==40367== by 0x165CF938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==40367== by 0x16585922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==40367== by 0x1652A2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==40367== by 0x11E76418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40367== by 0x11E0FD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40367== by 0x10AE3D38: PetscInitialize (pinit.c:924) ==40367== by 0x109BA2DF: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==40367== by 0x109BA32D: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==40367== by 0x11D953: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==40367== by 0x119133: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==40367== by 0x11B52C: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==40367== by 0x11B427: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==40367== by 0x11BA3B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==40367== by 0x117935: main (TestVertexBasedCellPopulationForCrypt.cpp:18) ==40367== ==40367== Open file descriptor 113: ==40367== ==40367== ==40367== Open file descriptor 110: ==40367== ==40367== ==40367== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestVertexBasedCellPopulationForCrypt_valgrind.txt ==40367== ==40367== ==40367== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==40367== ==40367== ==40367== ==40367== HEAP SUMMARY: ==40367== in use at exit: 618,542 bytes in 8,241 blocks ==40367== total heap usage: 53,901 allocs, 45,660 frees, 1,338,955,175 bytes allocated ==40367== ==40367== LEAK SUMMARY: ==40367== definitely lost: 0 bytes in 0 blocks ==40367== indirectly lost: 0 bytes in 0 blocks ==40367== possibly lost: 0 bytes in 0 blocks ==40367== still reachable: 232 bytes in 5 blocks ==40367== suppressed: 618,310 bytes in 8,236 blocks ==40367== Reachable blocks (those to which a pointer was found) are not shown. ==40367== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==40367== ==40367== For lists of detected and suppressed errors, rerun with: -s ==40367== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37)