==25323== Memcheck, a memory error detector ==25323== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==25323== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==25323== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestCell -malloc_debug -malloc_dump -memory_info ==25323== Parent PID: 23990 ==25323== ==25323== ==25323== FILE DESCRIPTORS: 9 open (3 std) at exit. ==25323== Open file descriptor 12: ==25323== at 0xED5107D: pipe (pipe.c:29) ==25323== by 0x196C507D: ??? ==25323== by 0x13C4E4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==25323== by 0xE95B418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==25323== by 0xE8F4D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==25323== by 0xD5C8D38: PetscInitialize (pinit.c:924) ==25323== by 0xD49D2DF: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==25323== by 0xD49D32D: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==25323== by 0x1291DB: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==25323== by 0x123ECD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==25323== by 0x126DAA: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==25323== by 0x126C4A: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==25323== by 0x1272E1: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==25323== by 0x1222F5: main (TestCell.cpp:19) ==25323== ==25323== Open file descriptor 8: /dev/shm/open_mpi.0000 ==25323== at 0xED55A1C: __open_nocancel (open64_nocancel.c:39) ==25323== by 0xECD9BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) ==25323== by 0xE852822: ??? ==25323== by 0xE85296F: ??? ==25323== by 0x13CF36DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==25323== by 0x13CF3938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==25323== by 0x13CA9922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==25323== by 0x13C4E2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==25323== by 0xE95B418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==25323== by 0xE8F4D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==25323== by 0xD5C8D38: PetscInitialize (pinit.c:924) ==25323== by 0xD49D2DF: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==25323== by 0xD49D32D: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==25323== by 0x1291DB: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==25323== by 0x123ECD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==25323== by 0x126DAA: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==25323== by 0x126C4A: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==25323== by 0x1272E1: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==25323== by 0x1222F5: main (TestCell.cpp:19) ==25323== ==25323== Open file descriptor 113: ==25323== ==25323== ==25323== Open file descriptor 110: ==25323== ==25323== ==25323== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestCell_valgrind.txt ==25323== ==25323== ==25323== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==25323== ==25323== ==25323== ==25323== HEAP SUMMARY: ==25323== in use at exit: 618,503 bytes in 8,237 blocks ==25323== total heap usage: 5,183,516 allocs, 5,175,279 frees, 1,819,183,201 bytes allocated ==25323== ==25323== LEAK SUMMARY: ==25323== definitely lost: 0 bytes in 0 blocks ==25323== indirectly lost: 0 bytes in 0 blocks ==25323== possibly lost: 0 bytes in 0 blocks ==25323== still reachable: 280 bytes in 5 blocks ==25323== suppressed: 618,223 bytes in 8,232 blocks ==25323== Reachable blocks (those to which a pointer was found) are not shown. ==25323== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==25323== ==25323== For lists of detected and suppressed errors, rerun with: -s ==25323== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 33 from 33)