==40369== Memcheck, a memory error detector ==40369== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==40369== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==40369== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/crypt/test/TestCryptSimulation1d -malloc_debug -malloc_dump -memory_info ==40369== Parent PID: 23990 ==40369== ==40369== ==40369== FILE DESCRIPTORS: 9 open (3 std) at exit. ==40369== Open file descriptor 12: ==40369== at 0x125F507D: pipe (pipe.c:29) ==40369== by 0x1B38507D: ??? ==40369== by 0x1652A4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==40369== by 0x11EB8418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40369== by 0x11E51D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40369== by 0x10B48D38: PetscInitialize (pinit.c:924) ==40369== by 0x109BA2DF: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==40369== by 0x109BA32D: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==40369== by 0x2254A3: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==40369== by 0x21CB9F: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==40369== by 0x22067C: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==40369== by 0x220577: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==40369== by 0x220B8B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==40369== by 0x21B395: main (TestCryptSimulation1d.cpp:18) ==40369== ==40369== Open file descriptor 8: /dev/shm/open_mpi.0000 ==40369== at 0x125F9A1C: __open_nocancel (open64_nocancel.c:39) ==40369== by 0x1257DBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) ==40369== by 0x109EF822: ??? ==40369== by 0x109EF96F: ??? ==40369== by 0x165CF6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==40369== by 0x165CF938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==40369== by 0x16585922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==40369== by 0x1652A2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==40369== by 0x11EB8418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40369== by 0x11E51D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40369== by 0x10B48D38: PetscInitialize (pinit.c:924) ==40369== by 0x109BA2DF: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==40369== by 0x109BA32D: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==40369== by 0x2254A3: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==40369== by 0x21CB9F: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==40369== by 0x22067C: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==40369== by 0x220577: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==40369== by 0x220B8B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==40369== by 0x21B395: main (TestCryptSimulation1d.cpp:18) ==40369== ==40369== Open file descriptor 113: ==40369== ==40369== ==40369== Open file descriptor 110: ==40369== ==40369== ==40369== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestCryptSimulation1d_valgrind.txt ==40369== ==40369== ==40369== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==40369== ==40369== ==40369== ==40369== HEAP SUMMARY: ==40369== in use at exit: 618,391 bytes in 8,236 blocks ==40369== total heap usage: 4,119,320 allocs, 4,111,084 frees, 1,972,565,510 bytes allocated ==40369== ==40369== LEAK SUMMARY: ==40369== definitely lost: 0 bytes in 0 blocks ==40369== indirectly lost: 0 bytes in 0 blocks ==40369== possibly lost: 0 bytes in 0 blocks ==40369== still reachable: 152 bytes in 4 blocks ==40369== suppressed: 618,239 bytes in 8,232 blocks ==40369== Reachable blocks (those to which a pointer was found) are not shown. ==40369== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==40369== ==40369== For lists of detected and suppressed errors, rerun with: -s ==40369== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 33 from 33)