==40636== Memcheck, a memory error detector ==40636== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==40636== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==40636== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/crypt/test/TestCryptSimulation2dWithMeshBasedCellPopulation -malloc_debug -malloc_dump -memory_info ==40636== Parent PID: 24177 ==40636== ==40636== ==40636== FILE DESCRIPTORS: 9 open (3 std) at exit. ==40636== Open file descriptor 12: ==40636== at 0x1122707D: pipe (pipe.c:29) ==40636== by 0x1B37D07D: ??? ==40636== by 0x165C84CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==40636== by 0x12E83418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40636== by 0x12E1CD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40636== by 0x11B13D38: PetscInitialize (pinit.c:924) ==40636== by 0x109BA2DF: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==40636== by 0x109BA32D: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==40636== by 0x23B368: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==40636== by 0x231839: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==40636== by 0x235F6A: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==40636== by 0x235E0A: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==40636== by 0x2364A1: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==40636== by 0x22FC55: main (TestCryptSimulation2dWithMeshBasedCellPopulation.cpp:19) ==40636== ==40636== Open file descriptor 8: /dev/shm/open_mpi.0000 ==40636== at 0x1122BA1C: __open_nocancel (open64_nocancel.c:39) ==40636== by 0x111AFBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) ==40636== by 0x109F4822: ??? ==40636== by 0x109F496F: ??? ==40636== by 0x1666D6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==40636== by 0x1666D938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==40636== by 0x16623922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==40636== by 0x165C82DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==40636== by 0x12E83418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40636== by 0x12E1CD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40636== by 0x11B13D38: PetscInitialize (pinit.c:924) ==40636== by 0x109BA2DF: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==40636== by 0x109BA32D: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==40636== by 0x23B368: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==40636== by 0x231839: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==40636== by 0x235F6A: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==40636== by 0x235E0A: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==40636== by 0x2364A1: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==40636== by 0x22FC55: main (TestCryptSimulation2dWithMeshBasedCellPopulation.cpp:19) ==40636== ==40636== Open file descriptor 113: ==40636== ==40636== ==40636== Open file descriptor 110: ==40636== ==40636== ==40636== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestCryptSimulation2dWithMeshBasedCellPopulation_valgrind.txt ==40636== ==40636== ==40636== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==40636== ==40636== ==40636== ==40636== HEAP SUMMARY: ==40636== in use at exit: 618,375 bytes in 8,236 blocks ==40636== total heap usage: 6,308,297 allocs, 6,300,061 frees, 2,056,523,750 bytes allocated ==40636== ==40636== LEAK SUMMARY: ==40636== definitely lost: 0 bytes in 0 blocks ==40636== indirectly lost: 0 bytes in 0 blocks ==40636== possibly lost: 0 bytes in 0 blocks ==40636== still reachable: 152 bytes in 4 blocks ==40636== suppressed: 618,223 bytes in 8,232 blocks ==40636== Reachable blocks (those to which a pointer was found) are not shown. ==40636== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==40636== ==40636== For lists of detected and suppressed errors, rerun with: -s ==40636== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 33 from 33)