==34936== Memcheck, a memory error detector ==34936== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==34936== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==34936== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestOnLatticeSimulationWithPottsBasedCellPopulation -malloc_debug -malloc_dump -memory_info ==34936== Parent PID: 24177 ==34936== ==34936== ==34936== FILE DESCRIPTORS: 9 open (3 std) at exit. ==34936== Open file descriptor 12: ==34936== at 0xF96707D: pipe (pipe.c:29) ==34936== by 0x196BD07D: ??? ==34936== by 0x14D034CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==34936== by 0x115C3418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==34936== by 0x1155CD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==34936== by 0x10253D38: PetscInitialize (pinit.c:924) ==34936== by 0xF0FA2DF: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==34936== by 0xF0FA32D: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==34936== by 0x1D7654: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==34936== by 0x1CF139: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==34936== by 0x1D29B8: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==34936== by 0x1D2858: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==34936== by 0x1D2EEF: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==34936== by 0x1CD555: main (TestOnLatticeSimulationWithPottsBasedCellPopulation.cpp:19) ==34936== ==34936== Open file descriptor 8: /dev/shm/open_mpi.0000 ==34936== at 0xF96BA1C: __open_nocancel (open64_nocancel.c:39) ==34936== by 0xF8EFBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) ==34936== by 0xF134822: ??? ==34936== by 0xF13496F: ??? ==34936== by 0x14DA86DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==34936== by 0x14DA8938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==34936== by 0x14D5E922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==34936== by 0x14D032DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==34936== by 0x115C3418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==34936== by 0x1155CD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==34936== by 0x10253D38: PetscInitialize (pinit.c:924) ==34936== by 0xF0FA2DF: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==34936== by 0xF0FA32D: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==34936== by 0x1D7654: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==34936== by 0x1CF139: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==34936== by 0x1D29B8: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==34936== by 0x1D2858: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==34936== by 0x1D2EEF: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==34936== by 0x1CD555: main (TestOnLatticeSimulationWithPottsBasedCellPopulation.cpp:19) ==34936== ==34936== Open file descriptor 113: ==34936== ==34936== ==34936== Open file descriptor 110: ==34936== ==34936== ==34936== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestOnLatticeSimulationWithPottsBasedCellPopulation_valgrind.txt ==34936== ==34936== ==34936== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==34936== ==34936== ==34936== ==34936== HEAP SUMMARY: ==34936== in use at exit: 618,375 bytes in 8,237 blocks ==34936== total heap usage: 11,682,197 allocs, 11,673,960 frees, 2,208,174,746 bytes allocated ==34936== ==34936== LEAK SUMMARY: ==34936== definitely lost: 0 bytes in 0 blocks ==34936== indirectly lost: 0 bytes in 0 blocks ==34936== possibly lost: 0 bytes in 0 blocks ==34936== still reachable: 168 bytes in 5 blocks ==34936== suppressed: 618,207 bytes in 8,232 blocks ==34936== Reachable blocks (those to which a pointer was found) are not shown. ==34936== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==34936== ==34936== For lists of detected and suppressed errors, rerun with: -s ==34936== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 33 from 33)