==43306== Memcheck, a memory error detector ==43306== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==43306== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==43306== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/heart/test/TestMonodomainProblem -malloc_debug -malloc_dump -memory_info ==43306== Parent PID: 24123 ==43306== ==43306== Warning: invalid file descriptor -1 in syscall close() ==43306== ==43306== FILE DESCRIPTORS: 9 open (3 std) at exit. ==43306== Open file descriptor 12: ==43306== at 0xC14507D: pipe (pipe.c:29) ==43306== by 0x1433A07D: ??? ==43306== by 0x1003B4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==43306== by 0xB9EE418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==43306== by 0xB987D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==43306== by 0xA2C9D38: PetscInitialize (pinit.c:924) ==43306== by 0xA1392DF: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==43306== by 0xA13932D: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==43306== by 0x14A2B6: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==43306== by 0x14182D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==43306== by 0x144A20: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==43306== by 0x1448C0: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==43306== by 0x144F57: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==43306== by 0x13FC05: main (TestMonodomainProblem.cpp:19) ==43306== ==43306== Open file descriptor 8: /dev/shm/open_mpi.0000 ==43306== at 0xC149A1C: __open_nocancel (open64_nocancel.c:39) ==43306== by 0xC0CDBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) ==43306== by 0xA16E822: ??? ==43306== by 0xA16E96F: ??? ==43306== by 0x100E06DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==43306== by 0x100E0938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==43306== by 0x10096922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==43306== by 0x1003B2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==43306== by 0xB9EE418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==43306== by 0xB987D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==43306== by 0xA2C9D38: PetscInitialize (pinit.c:924) ==43306== by 0xA1392DF: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==43306== by 0xA13932D: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==43306== by 0x14A2B6: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==43306== by 0x14182D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==43306== by 0x144A20: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==43306== by 0x1448C0: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==43306== by 0x144F57: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==43306== by 0x13FC05: main (TestMonodomainProblem.cpp:19) ==43306== ==43306== Open file descriptor 113: ==43306== ==43306== ==43306== Open file descriptor 110: ==43306== ==43306== ==43306== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestMonodomainProblem_valgrind.txt ==43306== ==43306== ==43306== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==43306== ==43306== ==43306== ==43306== HEAP SUMMARY: ==43306== in use at exit: 618,825 bytes in 8,245 blocks ==43306== total heap usage: 6,613,800 allocs, 6,605,555 frees, 4,016,608,634 bytes allocated ==43306== ==43306== LEAK SUMMARY: ==43306== definitely lost: 0 bytes in 0 blocks ==43306== indirectly lost: 0 bytes in 0 blocks ==43306== possibly lost: 0 bytes in 0 blocks ==43306== still reachable: 120 bytes in 3 blocks ==43306== suppressed: 618,705 bytes in 8,242 blocks ==43306== Reachable blocks (those to which a pointer was found) are not shown. ==43306== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==43306== ==43306== For lists of detected and suppressed errors, rerun with: -s ==43306== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 127 from 33)