==40324== Memcheck, a memory error detector ==40324== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==40324== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==40324== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/crypt/test/TestOdeBasedCellCycleModelsForCrypt -malloc_debug -malloc_dump -memory_info ==40324== Parent PID: 24123 ==40324== ==40324== ==40324== FILE DESCRIPTORS: 9 open (3 std) at exit. ==40324== Open file descriptor 12: ==40324== at 0x10BDC07D: pipe (pipe.c:29) ==40324== by 0x1B38007D: ??? ==40324== by 0x1555F4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==40324== by 0x1049F418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40324== by 0x10438D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40324== by 0xF12FD38: PetscInitialize (pinit.c:924) ==40324== by 0xEFA12DF: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==40324== by 0xEFA132D: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==40324== by 0x192669: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==40324== by 0x18A60B: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==40324== by 0x18DC08: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==40324== by 0x18DAA8: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==40324== by 0x18E13F: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==40324== by 0x186F35: main (TestOdeBasedCellCycleModelsForCrypt.cpp:19) ==40324== ==40324== Open file descriptor 8: /dev/shm/open_mpi.0000 ==40324== at 0x10BE0A1C: __open_nocancel (open64_nocancel.c:39) ==40324== by 0x10B64BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) ==40324== by 0xEFD6822: ??? ==40324== by 0xEFD696F: ??? ==40324== by 0x156046DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==40324== by 0x15604938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==40324== by 0x155BA922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==40324== by 0x1555F2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==40324== by 0x1049F418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40324== by 0x10438D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40324== by 0xF12FD38: PetscInitialize (pinit.c:924) ==40324== by 0xEFA12DF: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==40324== by 0xEFA132D: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==40324== by 0x192669: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==40324== by 0x18A60B: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==40324== by 0x18DC08: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==40324== by 0x18DAA8: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==40324== by 0x18E13F: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==40324== by 0x186F35: main (TestOdeBasedCellCycleModelsForCrypt.cpp:19) ==40324== ==40324== Open file descriptor 113: ==40324== ==40324== ==40324== Open file descriptor 110: ==40324== ==40324== ==40324== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestOdeBasedCellCycleModelsForCrypt_valgrind.txt ==40324== ==40324== ==40324== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==40324== ==40324== ==40324== ==40324== HEAP SUMMARY: ==40324== in use at exit: 618,514 bytes in 8,241 blocks ==40324== total heap usage: 862,010 allocs, 853,769 frees, 1,460,903,372 bytes allocated ==40324== ==40324== LEAK SUMMARY: ==40324== definitely lost: 0 bytes in 0 blocks ==40324== indirectly lost: 0 bytes in 0 blocks ==40324== possibly lost: 0 bytes in 0 blocks ==40324== still reachable: 216 bytes in 5 blocks ==40324== suppressed: 618,298 bytes in 8,236 blocks ==40324== Reachable blocks (those to which a pointer was found) are not shown. ==40324== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==40324== ==40324== For lists of detected and suppressed errors, rerun with: -s ==40324== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37)