==27475== Memcheck, a memory error detector ==27475== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==27475== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==27475== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestOnLatticeSimulationWithCaBasedCellPopulation -malloc_debug -malloc_dump -memory_info ==27475== Parent PID: 24243 ==27475== ==27475== ==27475== FILE DESCRIPTORS: 9 open (3 std) at exit. ==27475== Open file descriptor 12: ==27475== at 0xFDE307D: pipe (pipe.c:29) ==27475== by 0x196BF07D: ??? ==27475== by 0x14E244CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==27475== by 0x11A3F418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==27475== by 0x119D8D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==27475== by 0x106CFD38: PetscInitialize (pinit.c:924) ==27475== by 0xF0FA1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==27475== by 0xF0FA227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==27475== by 0x1D4486: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==27475== by 0x1CDDB9: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==27475== by 0x1D1554: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==27475== by 0x1D13F4: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==27475== by 0x1D1A8B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==27475== by 0x1CC1D5: main (TestOnLatticeSimulationWithCaBasedCellPopulation.cpp:19) ==27475== ==27475== Open file descriptor 8: /dev/shm/open_mpi.0000 ==27475== at 0xFDE7A1C: __open_nocancel (open64_nocancel.c:39) ==27475== by 0xFD6BBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) ==27475== by 0xF12F822: ??? ==27475== by 0xF12F96F: ??? ==27475== by 0x14EC96DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==27475== by 0x14EC9938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==27475== by 0x14E7F922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==27475== by 0x14E242DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==27475== by 0x11A3F418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==27475== by 0x119D8D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==27475== by 0x106CFD38: PetscInitialize (pinit.c:924) ==27475== by 0xF0FA1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==27475== by 0xF0FA227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==27475== by 0x1D4486: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==27475== by 0x1CDDB9: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==27475== by 0x1D1554: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==27475== by 0x1D13F4: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==27475== by 0x1D1A8B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==27475== by 0x1CC1D5: main (TestOnLatticeSimulationWithCaBasedCellPopulation.cpp:19) ==27475== ==27475== Open file descriptor 113: ==27475== ==27475== ==27475== Open file descriptor 110: ==27475== ==27475== ==27475== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestOnLatticeSimulationWithCaBasedCellPopulation_valgrind.txt ==27475== ==27475== ==27475== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==27475== ==27475== ==27475== ==27475== HEAP SUMMARY: ==27475== in use at exit: 618,359 bytes in 8,236 blocks ==27475== total heap usage: 7,110,673 allocs, 7,102,437 frees, 8,072,001,118 bytes allocated ==27475== ==27475== LEAK SUMMARY: ==27475== definitely lost: 0 bytes in 0 blocks ==27475== indirectly lost: 0 bytes in 0 blocks ==27475== possibly lost: 0 bytes in 0 blocks ==27475== still reachable: 152 bytes in 4 blocks ==27475== suppressed: 618,207 bytes in 8,232 blocks ==27475== Reachable blocks (those to which a pointer was found) are not shown. ==27475== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==27475== ==27475== For lists of detected and suppressed errors, rerun with: -s ==27475== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 33 from 33)