==26882== Memcheck, a memory error detector ==26882== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==26882== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==26882== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestOffLatticeSimulationWithNodeBasedCellPopulationIn3d -malloc_debug -malloc_dump -memory_info ==26882== Parent PID: 24172 ==26882== ==26882== ==26882== FILE DESCRIPTORS: 9 open (3 std) at exit. ==26882== Open file descriptor 12: ==26882== at 0xF92307D: pipe (pipe.c:29) ==26882== by 0x196C007D: ??? ==26882== by 0x14D034CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==26882== by 0x115C3418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==26882== by 0x1155CD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==26882== by 0x10253D38: PetscInitialize (pinit.c:924) ==26882== by 0xF0FA2DF: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==26882== by 0xF0FA32D: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==26882== by 0x13385A: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==26882== by 0x12E813: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==26882== by 0x130FCC: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==26882== by 0x130EC7: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==26882== by 0x1314DB: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==26882== by 0x12D015: main (TestOffLatticeSimulationWithNodeBasedCellPopulationIn3d.cpp:18) ==26882== ==26882== Open file descriptor 8: /dev/shm/open_mpi.0000 ==26882== at 0xF927A1C: __open_nocancel (open64_nocancel.c:39) ==26882== by 0xF8ABBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) ==26882== by 0xF12F822: ??? ==26882== by 0xF12F96F: ??? ==26882== by 0x14DA86DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==26882== by 0x14DA8938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==26882== by 0x14D5E922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==26882== by 0x14D032DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==26882== by 0x115C3418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==26882== by 0x1155CD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==26882== by 0x10253D38: PetscInitialize (pinit.c:924) ==26882== by 0xF0FA2DF: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==26882== by 0xF0FA32D: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==26882== by 0x13385A: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==26882== by 0x12E813: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==26882== by 0x130FCC: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==26882== by 0x130EC7: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==26882== by 0x1314DB: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==26882== by 0x12D015: main (TestOffLatticeSimulationWithNodeBasedCellPopulationIn3d.cpp:18) ==26882== ==26882== Open file descriptor 113: ==26882== ==26882== ==26882== Open file descriptor 110: ==26882== ==26882== ==26882== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestOffLatticeSimulationWithNodeBasedCellPopulationIn3d_valgrind.txt ==26882== ==26882== ==26882== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==26882== ==26882== ==26882== ==26882== HEAP SUMMARY: ==26882== in use at exit: 618,359 bytes in 8,236 blocks ==26882== total heap usage: 6,672,055 allocs, 6,663,819 frees, 8,995,222,478 bytes allocated ==26882== ==26882== LEAK SUMMARY: ==26882== definitely lost: 0 bytes in 0 blocks ==26882== indirectly lost: 0 bytes in 0 blocks ==26882== possibly lost: 0 bytes in 0 blocks ==26882== still reachable: 152 bytes in 4 blocks ==26882== suppressed: 618,207 bytes in 8,232 blocks ==26882== Reachable blocks (those to which a pointer was found) are not shown. ==26882== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==26882== ==26882== For lists of detected and suppressed errors, rerun with: -s ==26882== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 33 from 33)