==34642== Memcheck, a memory error detector ==34642== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==34642== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==34642== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestOnLatticeSimulationWithPottsBasedCellPopulation -malloc_debug -malloc_dump -memory_info ==34642== Parent PID: 24172 ==34642== ==34642== ==34642== FILE DESCRIPTORS: 9 open (3 std) at exit. ==34642== Open file descriptor 12: ==34642== at 0xF96707D: pipe (pipe.c:29) ==34642== by 0x196C007D: ??? ==34642== by 0x14D034CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==34642== by 0x115C3418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==34642== by 0x1155CD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==34642== by 0x10253D38: PetscInitialize (pinit.c:924) ==34642== by 0xF0FA2DF: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==34642== by 0xF0FA32D: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==34642== by 0x1D7654: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==34642== by 0x1CF139: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==34642== by 0x1D29B8: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==34642== by 0x1D2858: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==34642== by 0x1D2EEF: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==34642== by 0x1CD555: main (TestOnLatticeSimulationWithPottsBasedCellPopulation.cpp:19) ==34642== ==34642== Open file descriptor 8: /dev/shm/open_mpi.0000 ==34642== at 0xF96BA1C: __open_nocancel (open64_nocancel.c:39) ==34642== by 0xF8EFBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) ==34642== by 0xF12F822: ??? ==34642== by 0xF12F96F: ??? ==34642== by 0x14DA86DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==34642== by 0x14DA8938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==34642== by 0x14D5E922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==34642== by 0x14D032DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==34642== by 0x115C3418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==34642== by 0x1155CD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==34642== by 0x10253D38: PetscInitialize (pinit.c:924) ==34642== by 0xF0FA2DF: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==34642== by 0xF0FA32D: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==34642== by 0x1D7654: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==34642== by 0x1CF139: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==34642== by 0x1D29B8: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==34642== by 0x1D2858: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==34642== by 0x1D2EEF: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==34642== by 0x1CD555: main (TestOnLatticeSimulationWithPottsBasedCellPopulation.cpp:19) ==34642== ==34642== Open file descriptor 113: ==34642== ==34642== ==34642== Open file descriptor 110: ==34642== ==34642== ==34642== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestOnLatticeSimulationWithPottsBasedCellPopulation_valgrind.txt ==34642== ==34642== ==34642== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==34642== ==34642== ==34642== ==34642== HEAP SUMMARY: ==34642== in use at exit: 618,375 bytes in 8,237 blocks ==34642== total heap usage: 11,682,196 allocs, 11,673,959 frees, 2,208,175,396 bytes allocated ==34642== ==34642== LEAK SUMMARY: ==34642== definitely lost: 0 bytes in 0 blocks ==34642== indirectly lost: 0 bytes in 0 blocks ==34642== possibly lost: 0 bytes in 0 blocks ==34642== still reachable: 168 bytes in 5 blocks ==34642== suppressed: 618,207 bytes in 8,232 blocks ==34642== Reachable blocks (those to which a pointer was found) are not shown. ==34642== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==34642== ==34642== For lists of detected and suppressed errors, rerun with: -s ==34642== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 33 from 33)