==24433== Memcheck, a memory error detector ==24433== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==24433== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==24433== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/io/test/TestHdf5DataReader -malloc_debug -malloc_dump -memory_info ==24433== Parent PID: 24181 ==24433== ==24433== ==24433== FILE DESCRIPTORS: 9 open (3 std) at exit. ==24433== Open file descriptor 12: ==24433== at 0x649F07D: pipe (pipe.c:29) ==24433== by 0xAF2D07D: ??? ==24433== by 0x8F8D4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==24433== by 0x669A418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==24433== by 0x6633D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==24433== by 0x4A96D38: PetscInitialize (pinit.c:924) ==24433== by 0x496D1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==24433== by 0x496D227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==24433== by 0x11BB1C: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==24433== by 0x117033: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==24433== by 0x119B8A: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==24433== by 0x119A2A: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==24433== by 0x11A0C1: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==24433== by 0x1151B5: main (TestHdf5DataReader.cpp:19) ==24433== ==24433== Open file descriptor 8: /dev/shm/open_mpi.0000 ==24433== at 0x64A3A1C: __open_nocancel (open64_nocancel.c:39) ==24433== by 0x6427BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) ==24433== by 0x5D20822: ??? ==24433== by 0x5D2096F: ??? ==24433== by 0x90326DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==24433== by 0x9032938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==24433== by 0x8FE8922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==24433== by 0x8F8D2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==24433== by 0x669A418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==24433== by 0x6633D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==24433== by 0x4A96D38: PetscInitialize (pinit.c:924) ==24433== by 0x496D1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==24433== by 0x496D227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==24433== by 0x11BB1C: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==24433== by 0x117033: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==24433== by 0x119B8A: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==24433== by 0x119A2A: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==24433== by 0x11A0C1: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==24433== by 0x1151B5: main (TestHdf5DataReader.cpp:19) ==24433== ==24433== Open file descriptor 113: ==24433== ==24433== ==24433== Open file descriptor 110: ==24433== ==24433== ==24433== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestHdf5DataReader_valgrind.txt ==24433== ==24433== ==24433== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==24433== ==24433== ==24433== ==24433== HEAP SUMMARY: ==24433== in use at exit: 618,414 bytes in 8,249 blocks ==24433== total heap usage: 58,545 allocs, 50,296 frees, 1,348,768,062 bytes allocated ==24433== ==24433== LEAK SUMMARY: ==24433== definitely lost: 0 bytes in 0 blocks ==24433== indirectly lost: 0 bytes in 0 blocks ==24433== possibly lost: 0 bytes in 0 blocks ==24433== still reachable: 120 bytes in 3 blocks ==24433== suppressed: 618,294 bytes in 8,246 blocks ==24433== Reachable blocks (those to which a pointer was found) are not shown. ==24433== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==24433== ==24433== For lists of detected and suppressed errors, rerun with: -s ==24433== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 44 from 38)